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11 years, 1 month ago
WEHI, Melbourne, Australia
Interspecies differential expression of orthologs with Edger
11 years, 1 month ago
WEHI, Melbourne, Australia
edgeR: mixing technical replicates from Illumina HiSeq and MiSeq
11 years, 2 months ago
WEHI, Melbourne, Australia
multi-level design - a simplified question - corrected table
11 years, 4 months ago
WEHI, Melbourne, Australia
cpm cutoff (edgeR) [was: total count filter cutoff (edgeR)]
11 years, 4 months ago
WEHI, Melbourne, Australia
edgeR and DESeq2: model design and estimation of dispersion
11 years, 4 months ago
WEHI, Melbourne, Australia
edgeR case-study, SAGE profiles of tumor tissue - where to find data sets?
11 years, 5 months ago
WEHI, Melbourne, Australia
Gene expression analysis with edgeR with a large, nested design matrix
11 years, 5 months ago
WEHI, Melbourne, Australia
1. comparing chip Information in meta analysis / Rankprod and 2. two color normalization
11 years, 6 months ago
WEHI, Melbourne, Australia
TCC::ERROR: Need the design matrix for GLM
11 years, 6 months ago
WEHI, Melbourne, Australia
queries re Voom + Limma for RNA-seq data
11 years, 7 months ago
WEHI, Melbourne, Australia
Handingly outliers with voom [was: tagwise parameters for negative binomial in edgeR]
11 years, 8 months ago
WEHI, Melbourne, Australia
Identifying genes that contribute to limma's roast/romer gene set enrichments
11 years, 9 months ago
WEHI, Melbourne, Australia
GLM common and trended dispersion EdgeR
11 years, 9 months ago
WEHI, Melbourne, Australia
EdgeR Design matrix not of full rank. The following coefficients not estimable errorR
11 years, 10 months ago
WEHI, Melbourne, Australia
EdgeR Design matrix not of full rank. The following coefficients not estimable errorR
11 years, 10 months ago
WEHI, Melbourne, Australia
easyRNASeq packages: overlapping exons warning unsolved (?) and use of paired end information
11 years, 10 months ago
WEHI, Melbourne, Australia
edgeR on ncRNA analysis question
11 years, 11 months ago
WEHI, Melbourne, Australia
question about design for limma time course, 2 conditions and drug treatment microarray experiment
11 years, 11 months ago
WEHI, Melbourne, Australia
Problem with topTable function (after Bioconductor update)
11 years, 12 months ago
WEHI, Melbourne, Australia
enrichment packages that accept t-stat (or related stat) as input
12 years, 1 month ago
WEHI, Melbourne, Australia
Can I input ordinal variables into a model in Limma?
12 years, 1 month ago
WEHI, Melbourne, Australia
Complex Limma design: technical replication, biological replication and repeated experiment
12 years, 4 months ago
WEHI, Melbourne, Australia
edgeR: very low p-value and very high variance within the group of replicates
12 years, 5 months ago
WEHI, Melbourne, Australia
Differential expression testing for groups with unequal variances/dispersions?
12 years, 5 months ago
WEHI, Melbourne, Australia
RNAseq less sensitive than microarrays? Is it a statistical issue?
12 years, 5 months ago
WEHI, Melbourne, Australia
How do I background correct an Illumina eset without using lumiB
12 years, 5 months ago
WEHI, Melbourne, Australia
problem with contrast.matrix and eBayes in limma
12 years, 5 months ago
WEHI, Melbourne, Australia
Combining differential gene expression on 2 reference transcriptomes: EdgeR analysis
12 years, 5 months ago
WEHI, Melbourne, Australia
calcNormFactors in edgeR - quick question from a very inexperienced user
12 years, 5 months ago
WEHI, Melbourne, Australia
Agilent 8x60K Gene Expression Package
12 years, 5 months ago
WEHI, Melbourne, Australia
edgeR: Using ratios (translational efficiencies) as input
12 years, 6 months ago
WEHI, Melbourne, Australia
lmFit not keeping rownames of arg object?
12 years, 7 months ago
WEHI, Melbourne, Australia
Limma: difficulties making multiple comparisons within one multiple-group model
12 years, 8 months ago
WEHI, Melbourne, Australia
AgiMicroRna for new Agilent Chip format
12 years, 8 months ago
WEHI, Melbourne, Australia
using offsets from EDASeq and cqn for edgeR
12 years, 9 months ago
WEHI, Melbourne, Australia
detailed analysis process of Comparisons Both Between and Within Subjects of edgeR
12 years, 10 months ago
WEHI, Melbourne, Australia
Equivalent of contrasts.fit & multi-contrast decideTests for edgeR?
12 years, 11 months ago
WEHI, Melbourne, Australia
Help interpreting many contrasts in one contrast versus many individual contrast matrices
12 years, 11 months ago
WEHI, Melbourne, Australia
How to design matrix on edgeR to study genotype x environmental interaction
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