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mohammedtoufiq91 ▴ 10
1 year ago
United States
What type of counts data to import for performing Isoform analysis in edgeR
mohammedtoufiq91 ▴ 10
1 year, 6 months ago
United States
Identifying DEGs using limma - NanoString GeoMx-NGS RNA Expression Data
mohammedtoufiq91 ▴ 10
2 years, 4 months ago
United States
Question about RNAseq analysis in EdgeR to identify common and donor specific differentially expressed genes
mohammedtoufiq91 ▴ 10
2 years, 6 months ago
United States
Question on constructing design matrix and defining contrasts for analysis
mohammedtoufiq91 ▴ 10
2 years, 6 months ago
United States
Question about setting threshold using filtering by expression on genes in edgeR
mohammedtoufiq91 ▴ 10
2 years, 8 months ago
United States
Question about filter by expression (filterByExpr) in edgeR
mohammedtoufiq91 ▴ 10
2 years, 9 months ago
United States
Question about avereps function of limma
mohammedtoufiq91 ▴ 10
2 years, 10 months ago
United States
Error in running Dispersion estimation analysis in EdgeR
mohammedtoufiq91 ▴ 10
2 years, 10 months ago
United States
Which input file is used for DGEList in EgdeR?
mohammedtoufiq91 ▴ 10
2 years, 10 months ago
United States
How to identify top most variable genes from log2 normalized data?
mohammedtoufiq91 ▴ 10
2 years, 12 months ago
United States
Question about making Contrasts for comparisons and assignment of values
mohammedtoufiq91 ▴ 10
3 years ago
United States
How to interpret Histogram of average log2 CPM filtering in EdgeR?
mohammedtoufiq91 ▴ 10
3 years ago
United States
Extracting specific comparisons after fitting model in EdgeR
mohammedtoufiq91 ▴ 10
3 years ago
United States
Does negative corfit$consensus cause issues while fitting a model in limma
mohammedtoufiq91 ▴ 10
3 years ago
United States
Error while reading rsem files in tximport
mohammedtoufiq91 ▴ 10
3 years ago
United States
Question on performing filtering by gene expression on a normalized matrix in limma?
mohammedtoufiq91 ▴ 10
3 years ago
United States
Possibility of using TPM or FPKM values in edgeR for differential expression analysis?
mohammedtoufiq91 ▴ 10
3 years ago
United States
Unlog transformed data in DESeq2
mohammedtoufiq91 ▴ 10
3 years ago
United States
How to process and analyze Total RNA-Seq data?
mohammedtoufiq91 ▴ 10
3 years, 6 months ago
United States
Question on RNA-Seq single sample data analysis in EdgeR
mohammedtoufiq91 ▴ 10
3 years, 6 months ago
United States
How to best visualize multi-level transcriptomics experiment data?
mohammedtoufiq91 ▴ 10
3 years, 8 months ago
United States
How to make design matrices or compare contrast in limma
mohammedtoufiq91 ▴ 10
4 years, 4 months ago
United States
Re-normalize microarray dataset in R
mohammedtoufiq91 ▴ 10
6 years ago
United States
How to adjust and align timepoints on x-axis in the ggplot2
mohammedtoufiq91 ▴ 10
6 years, 2 months ago
United States
Handle missing values in the z-score matrix while plotting heatmap in the ComplexHeatmap
mohammedtoufiq91 ▴ 10
6 years, 3 months ago
United States
Merging two files based on the identifier column (gene symbols)?
mohammedtoufiq91 ▴ 10
6 years, 3 months ago
United States
Support for import of custom matrix data in the ddCt R package
mohammedtoufiq91 ▴ 10
6 years, 3 months ago
United States
Sample grouping (phenoData) and visualization in R package- HtqPCR
mohammedtoufiq91 ▴ 10
7 years, 2 months ago
United States
Creation of qPCRset in R for HtqPCR
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