User: mohammedtoufiq91

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Posts by mohammedtoufiq91

<prev • 10 results • page 1 of 1 • next >
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Comment: C: Merging two files based on the identifier column (gene symbols)?
... Thank you so much for the suggestions. ...
written 6 days ago by mohammedtoufiq910
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Merging two files based on the identifier column (gene symbols)?
... Hi, I have two different *.csv files with different column headers except one column, i.e, one with the gene symbols and expression data (samples), and the other with the gene symbols and phenotypic data/attributes, in both the files, one column (gene symbols) is same. I would like to merge both th ...
R packages merge files gene annotations written 7 days ago by mohammedtoufiq910
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Comment: C: Are there any functions to subtract all features(rows) to a particular value(row
... Thank you shahryary. ...
written 26 days ago by mohammedtoufiq910
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Comment: C: Are there any functions to subtract all features(rows) to a particular value(row
... Thank you. But if I have hundreds of values/sample columns arranged in the data file , for instance as given below: |Feature| |Value1| |Value2| |Value3| |Value4| |Value5| |Value...n| How could this be done to obtain the output in the single table? df1$Output_value1, df1$Output_value2, df1$Out ...
written 27 days ago by mohammedtoufiq910
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Are there any functions to subtract all features(rows) to a particular value(row) in the same data file?
... I am new to programming in R and Python, however have some basics. I have a technical question about computation. I would like to know if there are any functions for performing subtraction of all features(rows) to a particular value (row) from the same data list. I would like to obtain the output_va ...
normalization R python matrix written 27 days ago by mohammedtoufiq910 • updated 27 days ago by shahryary30
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Comment: C: Support for import of custom matrix data in the ddCt R package
... Thank you David. I am currently working with the Biomark Fluidigm qRT-PCR data. This is a raw threshold cycle (Ct) data, there are a total of 264 test genes + 8 housekeeping genes and 27 samples (columns)in the *.txt format. These 27 samples are grouped into 3 timepoints (i.e Timepoint_1 = 7, Timep ...
written 27 days ago by mohammedtoufiq910
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Support for import of custom matrix data in the ddCt R package
... Hi, I would like to know if I can import the data into the ddCt package in the matrix format for the analysing the qRTPCR data. If possible, how could this be done? I have a .txt file with 260 genes (rows) and 27 samples (columns). Best Regards, Toufiq ...
ddct R analysis import qrtpcr written 28 days ago by mohammedtoufiq910 • updated 27 days ago by Zhang, Jitao David110
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Sample grouping (phenoData) and visualization in R package- HtqPCR
... Hi, I created a qPCRset using HTqPCR package for analysing the RTPCR data from BioMark Fluidigm setup. I am facing issues while grouping the samples for the data visualization and analysis. I would like to group the samples based on the "Type" parameter such as 1, 4, and 6. However, getting an erro ...
visualization htqpcr R phenodata grouping written 28 days ago by mohammedtoufiq910
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Comment: C: Creation of qPCRset in R for HtqPCR
... The same error shows up when using example data:   > library("HTqPCR") > exPath <- system.file("exData", package = "HTqPCR") > raw1 <- readCtData(files = "BioMark_sample.csv", path = exPath, format = "BioMark", n.features = 48, n.data = 48) > View(raw1) > dim(raw1) Features  S ...
written 11 months ago by mohammedtoufiq910
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Creation of qPCRset in R for HtqPCR
... Hi, I am trying to analyse the RT-qPCR datasets from Fluidigm In R in HtqPCR package and experiencing some issues creating a qPCR set. Please assist me with respect to same.   library("HTqPCR") exPath <- system.file("exData", package = "HTqPCR") raw <- readCtData("Assay_Plate_1.csv", path ...
htqpcr R bioconductor qpcrset object written 11 months ago by mohammedtoufiq910

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