Scholar
Created An Answer That Has Been Accepted
Awarded 4960 times (see all awards). Earned by the
following contributors:
3 weeks, 3 days ago
United States
Answer: Use of negative binomial model for exponential decay rate estimation using DESeq
3 weeks, 5 days ago
United States
Answer: DESeq2 - dispersion estimation when there is none
1 month, 2 weeks ago
United States
Answer: DESeq2 , filter and theta arguments in resutlts()
2 months, 3 weeks ago
United States
Answer: evaluate the variable importance on genes
3 months, 2 weeks ago
United States
Answer: Continuous variable to identify responder genes using DESeq2
3 months, 2 weeks ago
United States
Answer: DESeq2 analysis on time-series RNA experiment
5 months, 4 weeks ago
United States
Answer: DESeq2: Comparison of single clinical sample to 4 normals using tumour cohort t
6 months, 1 week ago
United States
Answer: DESeq2 unable to handle large count values
8 months, 3 weeks ago
United States
Answer: Import Salmon data with tximport and pool technical replicates
9 months, 4 weeks ago
United States
Answer: RNA seq differential expression analysis for large sample size
10 months, 2 weeks ago
United States
Answer: Proper way to implement DESeq2 when comparing samples with trisomies?
1 year ago
United States
Answer: Applying DESeq2 to (suspected) Poisson distributed gene expression data (in the
1 year ago
United States
Answer: DESeq2 1.40.0 binary install issue on macOS x86 (Bioconductor 3.17)
1 year, 1 month ago
United States
Answer: Adding cell population estimates as a covariate in DESeq2 differential gene expr
1 year, 1 month ago
United States
Answer: Mistake in Cook's distance calculation in DESeq2 or am I missing something?
1 year, 3 months ago
United States
Answer: Joining different datasets and analyzing using the group-specific condition effe
1 year, 4 months ago
United States
Answer: Calculated contrasts in DESeq2: difference between manual coefficients and DESeq
1 year, 4 months ago
United States
Answer: Normalizing Salmon output count data matrix using DESeq2
1 year, 4 months ago
United States
Answer: Find ranges that are shared by 80% or more of 10 GRanges objects
1 year, 5 months ago
United States
Answer: How to interpret DESeq2's padj after setting lfcThreshold and the log2FC is grea
1 year, 8 months ago
United States
Answer: Selecting individual samples from tximport and DGE matrix design with missing bi
1 year, 8 months ago
United States
Answer: DESeq2 contrasts using all relevant samples vs all samples
1 year, 8 months ago
United States
Answer: Log2FC values slightly higher in some genes after DESeq2 shrinkage
1 year, 9 months ago
United States
Answer: Contradictory results in smallRNA differential expression analysis using DESeq2
1 year, 10 months ago
United States
Answer: Can I use limma::avereps to remove dupicated genes before conduct DEG based on R
2 years, 1 month ago
United States
Answer: Questions regarding failing tximeta import for swish
2 years, 1 month ago
United States
Answer: DESeq2 With Ratios from Nascent RNA-seq (Conversion Rate from slamdunk)
2 years, 2 months ago
United States
Answer: Finding significant up-regulated and down-regulated genes given a log2FoldChange
2 years, 2 months ago
United States
Answer: The number of controls versus treatment in differential expression analysis
2 years, 2 months ago
United States
Answer: Strange error while running DESeq() function.
2 years, 2 months ago
United States
Answer: DESeq2: Subset Results from 2-Factor Design
2 years, 2 months ago
United States
Answer: First principal component variance stabilised RNA-seq data correlates with total
2 years, 3 months ago
United States
Answer: How to solve the "tilted tail" after DESeq2 normalization.
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