Scholar
Created An Answer That Has Been Accepted
Awarded 4958 times (see all awards). Earned by the
following contributors:
2 years, 3 months ago
WEHI, Melbourne, Australia
Answer: Differential gene expression and (adjusted) p-values
2 years, 3 months ago
WEHI, Melbourne, Australia
Answer: catchKallisto results are not counts
2 years, 5 months ago
WEHI, Melbourne, Australia
Answer: Multi-level design RRBS analysis with voomLmFit
2 years, 6 months ago
WEHI, Melbourne, Australia
Answer: RMA on different disease labels
2 years, 6 months ago
WEHI, Melbourne, Australia
Answer: Advice to use block factor and duplicatecorrelation in RNA-seq experiment
2 years, 6 months ago
WEHI, Melbourne, Australia
Answer: DESeq2/edgeR/limma help with most appropriate design matrix
2 years, 7 months ago
WEHI, Melbourne, Australia
Answer: edgeR contrasts confusion when multiple groups are involved
2 years, 8 months ago
WEHI, Melbourne, Australia
Answer: EdgeR, tumor normal pair, no replicatie but multiple patients, to focus on indi
2 years, 9 months ago
WEHI, Melbourne, Australia
Answer: Query regarding the use of eBayes + topTable and treat + topTreat
2 years, 9 months ago
WEHI, Melbourne, Australia
Answer: Query regarding the use of eBayes + topTable and treat + topTreat
2 years, 9 months ago
WEHI, Melbourne, Australia
Answer: Query regarding the use of eBayes + topTable and treat + topTreat
2 years, 10 months ago
WEHI, Melbourne, Australia
Answer: Complex design with paired and unpaired samples with edgeR RNA-seq DE analysis
2 years, 10 months ago
WEHI, Melbourne, Australia
Answer: lmFit, continuous exposure, adjustment covariates
2 years, 11 months ago
WEHI, Melbourne, Australia
Answer: Use of arrayWeights with two treatment groups
2 years, 11 months ago
WEHI, Melbourne, Australia
Answer: Differential expression error in edgeR - maybe from design matrix?
2 years, 12 months ago
WEHI, Melbourne, Australia
Answer: Optimal edgeR design for a single-factor experiment
2 years, 12 months ago
WEHI, Melbourne, Australia
Answer: The eBayes function gives two p-values for each row
3 years ago
WEHI, Melbourne, Australia
Answer: Is it always preferable to recount library sizes of DGEList object in edgeR afte
3 years ago
WEHI, Melbourne, Australia
Answer: Pipeline for an Anova-like analysis in edgeR
3 years ago
WEHI, Melbourne, Australia
Answer: How to apply limma-trend or voom to batch corrected single cell data? (non-integ
3 years, 1 month ago
WEHI, Melbourne, Australia
Answer: edgeR for a mixture experiment
3 years, 1 month ago
WEHI, Melbourne, Australia
Answer: Multi-level comparisons with paired data: duplicateCorrelation or not?
3 years, 1 month ago
WEHI, Melbourne, Australia
Answer: Get the latest gene name from Entrez ID
3 years, 2 months ago
WEHI, Melbourne, Australia
Answer: How to download KEGG pathways for list of enriched genes
3 years, 3 months ago
WEHI, Melbourne, Australia
Answer: Can I remove failed samples using DGEList then filterByExpr?
3 years, 3 months ago
WEHI, Melbourne, Australia
Answer: Using limma for the analysis of qPCR data
3 years, 4 months ago
WEHI, Melbourne, Australia
Answer: Limma Paired Analysis - Force intercept to 0
3 years, 4 months ago
WEHI, Melbourne, Australia
Answer: Duplicated ENTREZID gene annotations org.Hs.eg.db
3 years, 4 months ago
WEHI, Melbourne, Australia
Answer: read.idat function misleading error when reading compressed files
3 years, 4 months ago
WEHI, Melbourne, Australia
Answer: Self-contained gene set testing with DESeq2 results
3 years, 5 months ago
WEHI, Melbourne, Australia
Answer: Limma: extend reading raw Illumina files, with Gene Omnbus Expression formats
3 years, 5 months ago
WEHI, Melbourne, Australia
Answer: Addressing the batch effect in multifactor experiment
3 years, 5 months ago
WEHI, Melbourne, Australia
Answer: Normalization for within-sample gene correlation
3 years, 6 months ago
WEHI, Melbourne, Australia
Answer: Paired analysis adjusted for RIN value
3 years, 6 months ago
WEHI, Melbourne, Australia
Answer: catchSalmon for tx-level DE
3 years, 7 months ago
WEHI, Melbourne, Australia
A: Reasoning behind weighting of of exon expression values in limma diffSplice func
3 years, 8 months ago
WEHI, Melbourne, Australia
A: What is the correct use of removeBatchEffect's design parameter
3 years, 8 months ago
WEHI, Melbourne, Australia
A: eisaR settings for three biological replicates
3 years, 9 months ago
WEHI, Melbourne, Australia
A: edgeR batch effect correction for unevenly distributed groups
3 years, 10 months ago
WEHI, Melbourne, Australia
A: Differential methylation analysis and paired samples
3 years, 11 months ago
WEHI, Melbourne, Australia
A: How to create a matrix from a set of files containing counts for a set of attri
3 years, 11 months ago
WEHI, Melbourne, Australia
A: Limma multi-group analysis - General F-test
4 years ago
WEHI, Melbourne, Australia
A: comparing one sample to multiple controls
4 years, 2 months ago
WEHI, Melbourne, Australia
A: Limma when to use zero intercept
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