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Created An Answer That Has Been Accepted
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following contributors:
8 years, 5 months ago
WEHI, Melbourne, Australia
Limma - Two-color group differences *and* correlation with individual differences.
8 years, 5 months ago
WEHI, Melbourne, Australia
Error in plot.new() : figure margins too large
8 years, 5 months ago
WEHI, Melbourne, Australia
A: Identification of DEGs through limma analysis
8 years, 5 months ago
WEHI, Melbourne, Australia
Identification of DEGs through limma analysis
8 years, 6 months ago
WEHI, Melbourne, Australia
A: miRNA differential expression analysis
8 years, 6 months ago
WEHI, Melbourne, Australia
limma; Only fit list of certain genes/ filter eSet
8 years, 7 months ago
WEHI, Melbourne, Australia
limma; Only fit list of certain genes/ filter eSet
8 years, 7 months ago
WEHI, Melbourne, Australia
limma; Only fit list of certain genes/ filter eSet
8 years, 7 months ago
WEHI, Melbourne, Australia
A: unusal expression level values after normalization in Affymetrix Microarray expe
8 years, 8 months ago
WEHI, Melbourne, Australia
limma; Only fit list of certain genes/ filter eSet
8 years, 8 months ago
WEHI, Melbourne, Australia
A: Should I adjust my q-values in edgeR/DESeq2 in my example?
8 years, 8 months ago
WEHI, Melbourne, Australia
A: heatmap of genes based on enriched GO categories
8 years, 8 months ago
WEHI, Melbourne, Australia
limma; Only fit list of certain genes/ filter eSet
8 years, 9 months ago
WEHI, Melbourne, Australia
limma; Only fit list of certain genes/ filter eSet
8 years, 9 months ago
WEHI, Melbourne, Australia
A: limma decideTests: only p-value less than (but not equal to) alpha are flagged a
8 years, 9 months ago
WEHI, Melbourne, Australia
limma; Only fit list of certain genes/ filter eSet
8 years, 9 months ago
WEHI, Melbourne, Australia
limma; Only fit list of certain genes/ filter eSet
8 years, 9 months ago
WEHI, Melbourne, Australia
limma; Only fit list of certain genes/ filter eSet
8 years, 9 months ago
WEHI, Melbourne, Australia
A: Limma - Two-color group differences *and* correlation with individual difference
8 years, 10 months ago
WEHI, Melbourne, Australia
Question about genas function in the limma package
8 years, 10 months ago
WEHI, Melbourne, Australia
A: Confusing: identify differentially expression genes (DEG) perturbed by a drug in
8 years, 10 months ago
WEHI, Melbourne, Australia
A: Difficulty for analysis of GSE7864
8 years, 10 months ago
WEHI, Melbourne, Australia
A: how to use "non-standard" species for KEGG / GO analysis in limma?
8 years, 11 months ago
WEHI, Melbourne, Australia
A: Question about genas function in the limma package
9 years, 1 month ago
WEHI, Melbourne, Australia
A: background correction for illumina array files
9 years, 1 month ago
WEHI, Melbourne, Australia
A: Getting genes list associated to current GO terms
9 years, 1 month ago
WEHI, Melbourne, Australia
A: Limma biological replicates only in one group
9 years, 2 months ago
WEHI, Melbourne, Australia
A: EdgeR GLM, when factor categories are not equaly represented in different groups
9 years, 2 months ago
WEHI, Melbourne, Australia
A: Where is the source code for qAbundanceDist?
9 years, 2 months ago
WEHI, Melbourne, Australia
A: how to export data as excel file from plotSmear when using edgeR
9 years, 2 months ago
WEHI, Melbourne, Australia
A: In limma's barcode plot, why are the cutoffs for the pale red and blue bands +/-
9 years, 2 months ago
WEHI, Melbourne, Australia
A: Voom: need at least two non-NA values to interpolate
9 years, 3 months ago
WEHI, Melbourne, Australia
A: variance-covariance matrix edgeR
9 years, 4 months ago
WEHI, Melbourne, Australia
A: seeking a paper or journal review about repeated multiple testing for Biological
9 years, 4 months ago
WEHI, Melbourne, Australia
A: Problem with Agilent microarray data analysis using limma package
9 years, 4 months ago
WEHI, Melbourne, Australia
A: How can I coerce "list" to S4 "List" (reproducible example is available)?
9 years, 4 months ago
WEHI, Melbourne, Australia
A: Competitive gene set testing between two sets of genes
9 years, 5 months ago
WEHI, Melbourne, Australia
A: Problem obtaining standard error from limma
9 years, 6 months ago
WEHI, Melbourne, Australia
A: Combining data from multiple illumina microarray experiments
9 years, 6 months ago
WEHI, Melbourne, Australia
A: Baseline comparison using "Comparisons both between and within subjects"
9 years, 7 months ago
WEHI, Melbourne, Australia
Is filtering necessary to extract significant DE genes with limma ?
9 years, 7 months ago
WEHI, Melbourne, Australia
Setting contrasts in limma where null hypothesis is that Test = 2 x Control
9 years, 7 months ago
WEHI, Melbourne, Australia
Baseline comparison using "Comparisons both between and within subjects"
9 years, 7 months ago
WEHI, Melbourne, Australia
microarray data analsis with limma?
9 years, 7 months ago
WEHI, Melbourne, Australia
Difficulty for analysis of GSE7864
9 years, 7 months ago
WEHI, Melbourne, Australia
How to generate STF file for custom array in limma?
9 years, 7 months ago
WEHI, Melbourne, Australia
DESeq and Limma+Voom Normalization for Rna-Seq Data Using Ercc Spike-In
9 years, 7 months ago
WEHI, Melbourne, Australia
background correction for illumina array files
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