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Created An Answer That Has Been Accepted
Awarded 4958 times (see all awards). Earned by the
following contributors:
1 day, 18 hours ago
Barcelona/Universitat Pompeu Fabra
Answer: Method to find pathways different between 2 groups
10 months ago
Barcelona/Universitat Pompeu Fabra
Answer: Gene set analysis: GSVA, Z-Score, and fold-changes
1 year, 6 months ago
Barcelona/Universitat Pompeu Fabra
Answer: 'combined score' calculation with singscore vs gsva
1 year, 10 months ago
Barcelona/Universitat Pompeu Fabra
Answer: MafH5.gnomAD.v3.1.2.GRCh38 omitted indels
1 year, 10 months ago
Barcelona/Universitat Pompeu Fabra
Answer: Why Negative value from GSVA
1 year, 11 months ago
Barcelona/Universitat Pompeu Fabra
Answer: How to run GSVA with partially NA genes
2 years, 1 month ago
Barcelona/Universitat Pompeu Fabra
Answer: subpopulations available in MafH5.gnomAD.v3.1.1.GRCh38
2 years, 10 months ago
Barcelona/Universitat Pompeu Fabra
Answer: Questions regard to GSVA and Limma
2 years, 10 months ago
Barcelona/Universitat Pompeu Fabra
Answer: Turn of GSVA filtering for method ssGSEA
2 years, 10 months ago
Barcelona/Universitat Pompeu Fabra
Answer: Issue with GSVA using dgCMatrix
3 years, 1 month ago
Barcelona/Universitat Pompeu Fabra
Answer: isSecondaryAlignment=FALSE with BWA MEM mapped BAM files not working?
3 years, 2 months ago
Barcelona/Universitat Pompeu Fabra
Answer: Discrepancy in GSVA for Nanostring when using normalized counts vs rlog as input
3 years, 9 months ago
Barcelona/Universitat Pompeu Fabra
A: pre-filtering gene sets for GSVA/ssGSEA
3 years, 10 months ago
Barcelona/Universitat Pompeu Fabra
A: Using GSVA All the pathway score are same
5 years, 1 month ago
Barcelona/Universitat Pompeu Fabra
A: Differential expression on GSVA scores using LIMMA
5 years, 4 months ago
Barcelona/Universitat Pompeu Fabra
retrieving phastConsScores via 'scores' from 'VariantFiltering' shows inconsistency
5 years, 6 months ago
Barcelona/Universitat Pompeu Fabra
A: GSVA: enrichment score bounds and enrichment score transformations
5 years, 7 months ago
Barcelona/Universitat Pompeu Fabra
A: GSVA & Limma for DE of Gene Sets using NanoString Data
5 years, 9 months ago
Barcelona/Universitat Pompeu Fabra
A: Meaning of zero for ssGESA value calculated by GSVA package
5 years, 9 months ago
Barcelona/Universitat Pompeu Fabra
A: GSVA with NanoString nCounter Data - Pre-Processing
5 years, 11 months ago
Barcelona/Universitat Pompeu Fabra
retrieving phastConsScores via 'scores' from 'VariantFiltering' shows inconsistency
6 years, 4 months ago
Barcelona/Universitat Pompeu Fabra
A: Error thrown by GSEABase::getBroadSets function: Error: 'getBroadSets' failed to
6 years, 5 months ago
Barcelona/Universitat Pompeu Fabra
A: Gene missing in TxDb.Hsapiens.UCSC.hg19.knownGene
6 years, 10 months ago
Barcelona/Universitat Pompeu Fabra
Are published RNA seq data analyses often wrong in calculating p-values and FDR?
6 years, 10 months ago
Barcelona/Universitat Pompeu Fabra
qpgraph's qpPCC function giving different results than cor.test()
6 years, 11 months ago
Barcelona/Universitat Pompeu Fabra
Are published RNA seq data analyses often wrong in calculating p-values and FDR?
6 years, 12 months ago
Barcelona/Universitat Pompeu Fabra
qpgraph's qpPCC function giving different results than cor.test()
6 years, 12 months ago
Barcelona/Universitat Pompeu Fabra
A: GSVA indifferent to 'abs.ranking'
7 years ago
Barcelona/Universitat Pompeu Fabra
A: Crash GSVA 1.24.0 with bootstrapping
7 years ago
Barcelona/Universitat Pompeu Fabra
qpgraph's qpPCC function giving different results than cor.test()
7 years, 3 months ago
Barcelona/Universitat Pompeu Fabra
A: qpgraph's qpPCC function giving different results than cor.test()
7 years, 3 months ago
Barcelona/Universitat Pompeu Fabra
qpgraph's qpPCC function giving different results than cor.test()
8 years, 4 months ago
Barcelona/Universitat Pompeu Fabra
A: Network generation from adjacency matrix of zeroes and ones
8 years, 4 months ago
Barcelona/Universitat Pompeu Fabra
Network generation from adjacency matrix of zeroes and ones
8 years, 5 months ago
Barcelona/Universitat Pompeu Fabra
Best method/package for Gene Set Enrichment Analysis in microarrays?
8 years, 5 months ago
Barcelona/Universitat Pompeu Fabra
retrieving phastConsScores via 'scores' from 'VariantFiltering' shows inconsistency
8 years, 5 months ago
Barcelona/Universitat Pompeu Fabra
A: Error in running gsva function from GSVA package
9 years ago
Barcelona/Universitat Pompeu Fabra
retrieving phastConsScores via 'scores' from 'VariantFiltering' shows inconsistency
9 years ago
Barcelona/Universitat Pompeu Fabra
A: retrieving phastConsScores via 'scores' from 'VariantFiltering' shows inconsist
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