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Created An Answer That Has Been Accepted
Awarded 4942 times (see all awards). Earned by the
following contributors:
2 weeks, 3 days ago
United States
Answer: DESeq2 , filter and theta arguments in resutlts()
1 month, 3 weeks ago
United States
Answer: evaluate the variable importance on genes
2 months, 2 weeks ago
United States
Answer: Continuous variable to identify responder genes using DESeq2
2 months, 3 weeks ago
United States
Answer: DESeq2 analysis on time-series RNA experiment
5 months ago
United States
Answer: DESeq2: Comparison of single clinical sample to 4 normals using tumour cohort t
5 months, 1 week ago
United States
Answer: DESeq2 unable to handle large count values
7 months, 4 weeks ago
United States
Answer: Import Salmon data with tximport and pool technical replicates
8 months, 4 weeks ago
United States
Answer: RNA seq differential expression analysis for large sample size
9 months, 2 weeks ago
United States
Answer: Proper way to implement DESeq2 when comparing samples with trisomies?
11 months, 1 week ago
United States
Answer: Applying DESeq2 to (suspected) Poisson distributed gene expression data (in the
11 months, 3 weeks ago
United States
Answer: DESeq2 1.40.0 binary install issue on macOS x86 (Bioconductor 3.17)
1 year ago
United States
Answer: Adding cell population estimates as a covariate in DESeq2 differential gene expr
1 year ago
United States
Answer: Mistake in Cook's distance calculation in DESeq2 or am I missing something?
1 year, 2 months ago
United States
Answer: Joining different datasets and analyzing using the group-specific condition effe
1 year, 3 months ago
United States
Answer: Calculated contrasts in DESeq2: difference between manual coefficients and DESeq
1 year, 3 months ago
United States
Answer: Normalizing Salmon output count data matrix using DESeq2
1 year, 3 months ago
United States
Answer: Find ranges that are shared by 80% or more of 10 GRanges objects
1 year, 4 months ago
United States
Answer: How to interpret DESeq2's padj after setting lfcThreshold and the log2FC is grea
1 year, 7 months ago
United States
Answer: Selecting individual samples from tximport and DGE matrix design with missing bi
1 year, 7 months ago
United States
Answer: DESeq2 contrasts using all relevant samples vs all samples
1 year, 7 months ago
United States
Answer: Log2FC values slightly higher in some genes after DESeq2 shrinkage
1 year, 8 months ago
United States
Answer: Contradictory results in smallRNA differential expression analysis using DESeq2
1 year, 9 months ago
United States
Answer: Can I use limma::avereps to remove dupicated genes before conduct DEG based on R
2 years ago
United States
Answer: Questions regarding failing tximeta import for swish
2 years ago
United States
Answer: DESeq2 With Ratios from Nascent RNA-seq (Conversion Rate from slamdunk)
2 years, 1 month ago
United States
Answer: Finding significant up-regulated and down-regulated genes given a log2FoldChange
2 years, 1 month ago
United States
Answer: The number of controls versus treatment in differential expression analysis
2 years, 1 month ago
United States
Answer: Strange error while running DESeq() function.
2 years, 1 month ago
United States
Answer: DESeq2: Subset Results from 2-Factor Design
2 years, 1 month ago
United States
Answer: First principal component variance stabilised RNA-seq data correlates with total
2 years, 2 months ago
United States
Answer: How to solve the "tilted tail" after DESeq2 normalization.
2 years, 3 months ago
United States
Answer: Housekeeping genes vary across contrast groups, using DESeq2 on NanoString data
2 years, 3 months ago
United States
Answer: Joint disperstion estimation for DEXSeq and DESeq2
2 years, 4 months ago
United States
Answer: P-values change 100-fold with only a single count changed
2 years, 4 months ago
United States
Answer: DESeq2 - batch, condition and tissue information
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