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9 years, 8 months ago
WEHI, Melbourne, Australia
Please share me your helpful comments with edgeR analysis without replicate
9 years, 8 months ago
WEHI, Melbourne, Australia
modeling heteroscedasticity in limma-voom for RNA-Seq data analysis
9 years, 8 months ago
WEHI, Melbourne, Australia
Differential expression of FPKM from RNA-seq data using limma and voom()
9 years, 8 months ago
WEHI, Melbourne, Australia
Trouble identifying differentially expressed genes on Affymetrix Human Gene 2.0.ST using R with oligo and limma package
9 years, 8 months ago
WEHI, Melbourne, Australia
Possible ways of performing differential gene expression and analysis of RNA-Seq data from normalized counts of RSEM software
9 years, 8 months ago
WEHI, Melbourne, Australia
Test whether expression levels of two gene sets are significantly different
9 years, 8 months ago
WEHI, Melbourne, Australia
Fit a multinomial to RNA-seq count data
9 years, 8 months ago
WEHI, Melbourne, Australia
Differences between edgeR's and limma+voom's implementation of camera/roast/romer
9 years, 8 months ago
WEHI, Melbourne, Australia
Confidence intervals on edgeR logFC
9 years, 8 months ago
WEHI, Melbourne, Australia
In limma's barcode plot, why are the cutoffs for the pale red and blue bands +/-sqrt(2)?
9 years, 8 months ago
WEHI, Melbourne, Australia
Effect size similar to Cohen's d in limma
9 years, 8 months ago
WEHI, Melbourne, Australia
how to export data as excel file from plotSmear when using edgeR
9 years, 8 months ago
WEHI, Melbourne, Australia
Appropriate ways to filter counts data for voom/limma
9 years, 8 months ago
WEHI, Melbourne, Australia
Normalization methodology in DESeq/DESeq2 vs edgeR
9 years, 8 months ago
WEHI, Melbourne, Australia
Counting ambiguously mapped reads per feature
9 years, 8 months ago
WEHI, Melbourne, Australia
Error when fitting linear model with technical replicates and blocking variable
9 years, 8 months ago
WEHI, Melbourne, Australia
limma-voom when testing differential expression of a subset of genes.
9 years, 8 months ago
WEHI, Melbourne, Australia
Using of limma moderated t-test with "corrected" expression matrix resulting from ComBat batch effect correction
9 years, 8 months ago
WEHI, Melbourne, Australia
Calculating a p value by permutation analysis
9 years, 8 months ago
WEHI, Melbourne, Australia
Effects of continuous variable with adjustment for gender
9 years, 8 months ago
WEHI, Melbourne, Australia
Is filtering necessary to extract significant DE genes with limma ?
9 years, 8 months ago
WEHI, Melbourne, Australia
Differences between limma voom E values and edgeR cpm values?
9 years, 8 months ago
WEHI, Melbourne, Australia
A: Is filtering necessary to extract significant DE genes with limma ?
9 years, 8 months ago
WEHI, Melbourne, Australia
A: EdgeR returns small logFC values when using GLM approach
9 years, 8 months ago
WEHI, Melbourne, Australia
Differences between limma voom E values and edgeR cpm values?
9 years, 8 months ago
WEHI, Melbourne, Australia
Differences between limma voom E values and edgeR cpm values?
9 years, 9 months ago
WEHI, Melbourne, Australia
A: edgeR glmLRT and interaction effect: an example
9 years, 9 months ago
WEHI, Melbourne, Australia
A: Trouble identifying differentially expressed genes on Affymetrix Human Gene 2.0.
9 years, 10 months ago
WEHI, Melbourne, Australia
Differences between edgeR's and limma+voom's implementation of camera/roast/romer
9 years, 10 months ago
WEHI, Melbourne, Australia
A: Correct sequence of functions for edgeR, edgeR robust and edgeR QL.
9 years, 10 months ago
WEHI, Melbourne, Australia
Differences between edgeR's and limma+voom's implementation of camera/roast/romer
9 years, 10 months ago
WEHI, Melbourne, Australia
A: modeling zero-dominated RNA-seq with voom/limma and hurdle models (pscl)
9 years, 10 months ago
WEHI, Melbourne, Australia
Answer: Differential expression analysis: Permutation Test
9 years, 10 months ago
WEHI, Melbourne, Australia
Differences between edgeR's and limma+voom's implementation of camera/roast/romer
9 years, 10 months ago
WEHI, Melbourne, Australia
Differences between edgeR's and limma+voom's implementation of camera/roast/romer
9 years, 10 months ago
WEHI, Melbourne, Australia
Differences between edgeR's and limma+voom's implementation of camera/roast/romer
9 years, 10 months ago
WEHI, Melbourne, Australia
Differences between edgeR's and limma+voom's implementation of camera/roast/romer
9 years, 10 months ago
WEHI, Melbourne, Australia
A: Calculating a p value by permutation analysis
9 years, 10 months ago
WEHI, Melbourne, Australia
Differences between edgeR's and limma+voom's implementation of camera/roast/romer
9 years, 11 months ago
WEHI, Melbourne, Australia
how to use "non-standard" species for KEGG / GO analysis in limma?
9 years, 11 months ago
WEHI, Melbourne, Australia
A: edgeR cpm filter with >1 factor
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