Hi, I am new in R and bioconductor, when using TCGAbiolinks package analysis TCGA data and performing survival analysis, I get the follwoing warning message:Is there anything I can do to solve this error? any help will be appreciated greatly!
My code is as following:
dataSurv <- TCGAanalyze_SurvivalKM(clinical_patient = dataClin,
+ dataGE = dataFilt,
+ Genelist = rownames(dataDEGs),
+ Survresult = TRUE,
+ ThreshTop = 0.67,
+ ThreshDown = 0.33,
+ p.cut = 0.05)
Error in mRNAselected_values_ordered[1:(lastelementTOP - 1)] :
only 0's may be mixed with negative subscripts