Error in mRNAselected_values_ordered[1:(lastelementTOP - 1)]
0
0
Entering edit mode
lqfuture • 0
@lqfuture-12696
Last seen 7.2 years ago

Hi, I am new in R and bioconductor, when using TCGAbiolinks package analysis TCGA data and performing survival analysis, I get the follwoing warning message:Is there anything I can do to solve this error? any help will be appreciated greatly!

My code is as following:

 dataSurv <- TCGAanalyze_SurvivalKM(clinical_patient = dataClin,
+                                    dataGE = dataFilt,
+                                    Genelist = rownames(dataDEGs),
+                                    Survresult = TRUE,
+                                    ThreshTop = 0.67,
+                                    ThreshDown = 0.33,
+                                    p.cut = 0.05)

Error in mRNAselected_values_ordered[1:(lastelementTOP - 1)] : 
  only 0's may be mixed with negative subscripts

 

tcgabiolinks TCGA survival analysis • 950 views
ADD COMMENT

Login before adding your answer.

Traffic: 599 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6