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Answer: Dealing with 0 miRNA counts in DESeq2 analysis and influence in adjusted p-value
by
Michael Love
42k
This is covered in the workflow (rnaseqGene).
You can filter them, but no they will not negatively affect the multiple testing because o…
Comment: When doing differential methylation using the sesame package, seems to only go
by
ramiro.barrantes
▴
10
Thank you, the strange thing is that I am only getting positive effect sizes. I [see two relevant definitions][1]:
- Eff_* : The effect s…
Comment: When doing differential methylation using the sesame package, seems to only go
by
James W. MacDonald
67k
The odds ratio, not log FC. My bad.
Comment: When doing differential methylation using the sesame package, seems to only go
by
James W. MacDonald
67k
```
testResult$Eff_Condition > 0.1
```
Comment: clusterProfiler: BgRatio N value does not match the size of the gene universe th
by
Fatima
•
0
I identified 3804 genes with GO annotations.
I
put my liste of genes in this link [enter link description here][1]
universe <- mapIds…
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