DeSeq2 , Differntial expression
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sumetha • 0
@sumetha-14207
Last seen 3.7 years ago

Hi , I would like to know if DeSeq2 can be used to analyze gene expression of Single cell RNA seq data? If DeSeq cannot be used which other package would be a suitable choice for my samples?

Thanks.

SCRNA • 348 views
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Aaron Lun ★ 26k
@alun
Last seen 1 hour ago
The city by the bay

Funnily enough, there's a Bioconductor workflow for analyzing single-cell RNA-seq data:

https://www.bioconductor.org/help/workflows/simpleSingleCell/

... and you can also find relevant packages with the SingleCell tag:

http://www.bioconductor.org/packages/release/BiocViews.html#___SingleCell

... which should be enough to get you started.

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