error in library(clusterProfiler)
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@nakanomasayuki265-13274
Last seen 6.9 years ago

 

I would like to execute the clusterProfiler in R package.

But the following error message comes out.

How should I do to solve this problem?

Error: 'GSEA_internal' is not an exported object from 'namespace:DOSE'

Error: package or namespace load failed for ‘clusterProfiler’

R • 2.0k views
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Are your packages from a consistent version of Bioconductor, and up-to-date? Try BiocInstaller::biocValid().

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ningzhilin • 0
@ningzhilin-14223
Last seen 6.6 years ago
Shanghai

I also have this problem!!! Have you solved it?

I use conda to install clusterProfiler after created a new env in python3 version.

When I use it:

(laplace) -bash-4.1$ R

 

R version 3.3.2 (2016-10-31) -- "Sincere Pumpkin Patch"

Copyright (C) 2016 The R Foundation for Statistical Computing

Platform: x86_64-pc-linux-gnu (64-bit)

 

R is free software and comes with ABSOLUTELY NO WARRANTY.

You are welcome to redistribute it under certain conditions.

Type 'license()' or 'licence()' for distribution details.

 

  Natural language support but running in an English locale

 

R is a collaborative project with many contributors.

Type 'contributors()' for more information and

'citation()' on how to cite R or R packages in publications.

 

Type 'demo()' for some demos, 'help()' for on-line help, or

'help.start()' for an HTML browser interface to help.

Type 'q()' to quit R.

 

> library(DOSE)

 

DOSE v3.2.0  For help: https://guangchuangyu.github.io/DOSE

 

If you use DOSE in published research, please cite:

Guangchuang Yu, Li-Gen Wang, Guang-Rong Yan, Qing-Yu He. DOSE: an R/Bioconductor package for Disease Ontology Semantic and Enrichment analysis. Bioinformatics 2015, 31(4):608-609

 

There were 24 warnings (use warnings() to see them)

> library(clusterProfiler)

Error : object ‘GSEA_internal’ is not exported by 'namespace:DOSE'

Error: package or namespace load failed for ‘clusterProfiler’

 

The problem comes

How should I do?

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