Entering edit mode
Hi everyone,
The X-axis of my plot looks strange. Why the mean of normalized counts is super small? (My X-axis is 1e+01, 1e+05 but demo plot is 1, 100, 10000) 
Due to the shape of MA plot, I suppose to shrunk the log2 fold changes. I used lfcShrink() to do it but the result doesn't look like a output from results(). 
Thank you!
Thank you, Sir! I didn't notice it's 1e+05 instead of 1e-05. Do you happen to know lfcShrink( ) problem?
The command you used will work fine with the next version of DESeq2 (released this month). But for your version, you need to include res=res. This is also explained in the help page for the function. This is always the first place you should look if you have a question about a function:
You type into R:
And hit <return> and then look at the arguments, and the returned value, in particular.
Thank you!! I got the result.