You are correct Jim! That was my problem. Thanks a lot! Jianping --On Tuesday, September 13, 2005 10:27 AM -0400 "James W. MacDonald" <jmacdon at="" med.umich.edu=""> wrote: > Jianping Jin wrote: >> Dear Bioconductor: >> >> I got a problem with "golubEsets". The warning message I got was "data >> set 'golubMerge' not found in: data(golubMerge)". I checked my R >> version and package information on my Windows XP as below: > > I think the problem is you are trying to load something that is already > loaded. > > > library(golubEsets) > Loading required package: Biobase > Loading required package: tools > Welcome to Bioconductor > Vignettes contain introductory material. To view, > simply type: openVignette() > For details on reading vignettes, see > the openVignette help page. > > golubMerge > Expression Set (exprSet) with > 7129 genes > 72 samples > phenoData object with 11 variables and 72 cases > varLabels > Samples: Sample index > ALL.AML: Factor, indicating ALL or AML > BM.PB: Factor, sample from marrow or peripheral blood > T.B.cell: Factor, T cell or B cell leuk. > FAB: Factor, FAB classification > Date: Date sample obtained > Gender: Factor, gender of patient > pctBlasts: pct of cells that are blasts > Treatment: response to treatment > PS: Prediction strength > Source: Source of sample > > data(golubMerge) > Warning message: > data set 'golubMerge' not found in: data(golubMerge) > > HTH, > > Jim > > >> >> >>> sessionInfo() >> >> R version 2.1.0, 2005-04-18, i386-pc-mingw32 >> >> attached base packages: >> [1] "tools" "methods" "stats" "graphics" "grDevices" "utils" >> "datasets" >> [8] "base" >> >> other attached packages: >> golubEsets Biobase >> "1.0" "1.5.12" >> >> For certainty, I removed the golubEsets folder under ../R/rw2010/library >> and re-downloaded the package from the "Experiment data packages for >> BioC 1.6 (stable) of the bioconductor web site. Install the .zip file >> through within R. The problem remained the same. >> >> I will appreciate it very much if anyone could help to fix the problem! >> >> Jianping >> >> xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx >> x Jianping Jin Ph.D. x >> x Bioinformatics scientist x >> x Center for bioinformatics x >> x 3133 Bioinformatics Building x >> x CB# 7104 x >> x University of North Carolina x >> x Chapel Hill, NC 27599 x >> x Tel: (919)843-6105 x >> x Fax: (919)843-3103 x >> x E-mail: jjin at email.unc.edu x >> xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx >> >> _______________________________________________ >> Bioconductor mailing list >> Bioconductor at stat.math.ethz.ch >> https://stat.ethz.ch/mailman/listinfo/bioconductor > > > -- > James W. MacDonald > Affymetrix and cDNA Microarray Core > University of Michigan Cancer Center > 1500 E. Medical Center Drive > 7410 CCGC > Ann Arbor MI 48109 > 734-647-5623 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx x Jianping Jin Ph.D. x x Bioinformatics scientist x x Center for bioinformatics x x 3133 Bioinformatics Building x x CB# 7104 x x University of North Carolina x x Chapel Hill, NC 27599 x x Tel: (919)843-6105 x x Fax: (919)843-3103 x x E-mail: jjin at email.unc.edu x xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx