How to take mean from specific column
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@kritikamish99-9648
Last seen 6.4 years ago
India

Hi

I have column of gene expression  of 208 (104X2) samples. I want to take mean of all replicates using R loop Can any one suggest me

 

w x y a b e

5 1 1 2 4 1

6 2 2 5 3 6

7 3 3 8 9 3

8 4 6 9 1 3

so for example i have have w x y a b e columns i want to take avaerage of w and x, y and a , b and e and Print the average value into another data frame names as w_x y_a b_e

Mean R • 921 views
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@gordon-smyth
Last seen 2 hours ago
WEHI, Melbourne, Australia

The avearrays() function in the limma package does what you want. For example, if the replicates you want to average are side by side, then

ID <- rep(1:104, each=2)
ReducedExprMatrix <- avearrays(ExprMatrix, ID)

In general, columns with the same ID will be averaged.

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