I'm running the CAMERA package from bioconductor.
I've created an xcmsSet by c-binding multiple single xcmsSets, which all works fine. However, when I then later come back to the saved session to do annotation, Camera throws in the following error:
xsaC <- groupCorr(xsaF) Start grouping after correlation. Generating EIC's .. Error in getAllPeakEICs(object, index = index) : Raw data file:D:/Metab/Data/DATA FOR R/Aqueous Neg/SJ55.CDF not found !
I've set the working directory to
D:/Metab/Data/DATA FOR R/Aqueous Neg which contains all the raw files including SJ55.CDF, but the error remains.
Can I somehow point to the file for the package to recognise it?