>getOption("AnnBuilderSourceUrls") gives me >"ftp://ftp.ncbi.nih.gov/repository/UniGene" as an URL for UG, but this isn't >working A quick fix is to use getSrcUrl("all", organism = "Homo sapiens") (for human) instead of using getOption for source urls. We will change the options and have the pakcage updated. Thanks! > >since the file system has now subfolders "Homo_sapiens" etc. > > > >In your function getUGBuilt > >function (organism, url = "ftp://ftp.ncbi.nih.gov/repository/UniGene") > >{ > > .. > >} > >the url is also hard-coded and this causes an error in reading the >Hs.info-file under ftp://ftp.ncbi.nih.gov/repository/UniGene/Homo_sapiens. > > > >Here my question now . is there a new version which fixes this problem or >can you give me advice on how I can fix it? > >I wouldn't want to rewrite all these functions though . > > > >Thank you very much. > >Daniela > > > > > > > [[alternative HTML version deleted]] > >_______________________________________________ >Bioconductor mailing list >Bioconductor at stat.math.ethz.ch >https://stat.ethz.ch/mailman/listinfo/bioconductor Jianhua Zhang Department of Medical Oncology Dana-Farber Cancer Institute 44 Binney Street Boston, MA 02115-6084

On 20 Sep 2005, deggle at uni-koeln.de wrote: > I'm running R.2.1.1 with version 1.5.31 of AnnBuilder (1.6.2 is not > available on Bioconductor-page as a windows-version . as it gives an > error-message). We were having some trouble with our repository updating tools. A newer version of AnnBuilder for Windows is now available. Note that is requires R 2.2.0 or greater. To use it, please install the current alpha-test version of R. > Since I'm having trouble building a package I was debugging for the > last couple of days and there seems to be a problem with > > the url-file-system in UniGene. Yes, UniGene reorganized the data on their site (grumble grumble). The new version of AnnBuilder includes fixes for this. Best, + seth