Hello There,

When I tried to run cuff<-readCufflinks() I got this error as belows. The working directory is extdata, which is the test data set.

Checking samples table... Populating samples table... Error: Column name mismatch.

My environment is Ubuntu 16.04, R 3.4.2, RSQLite 2.0, cummeRbund 2.18.0.         

Any one knows what is the cause of this error and how to fix it?

It is very appreciated for your time and effort.

Zuolin

sessionInfo()
R version 3.4.2 (2017-09-28)
Platform: x86_64-pc-linux-gnu (64-bit)
Running under: Ubuntu 16.04.3 LTS

locale: 

attached base packages:
 [1] grid      stats4    parallel  stats     graphics  grDevices utils    
 [8] datasets  methods   base     

other attached packages:
 [1] cummeRbund_2.18.0    Gviz_1.22.0          rtracklayer_1.36.6  
 [4] GenomicRanges_1.28.6 GenomeInfoDb_1.12.3  IRanges_2.10.5      
 [7] S4Vectors_0.14.7     fastcluster_1.1.24   reshape2_1.4.2      
[10] ggplot2_2.2.1        RSQLite_2.0          BiocGenerics_0.22.1