Hi, Can someone please advise me on this error?
> pheno_data
ids treatment genotype
1 B1C control Resistant
2 B2C control Susceptible
3 B3C control Resistant
4 B4C control Susceptible
5 B1T inoculated Resistant
6 B2T inoculated Susceptible
7 B3T inoculated Resistant
8 B4T inoculated Susceptible
> list.files()
[1] "B1C" "B1T" "B2C" "B2T" "B3C" "B3T" "B4C" "B4T"
Error in ballgown(dataDir = "/fast/users/a123456/Ballgown/prr_bulk", :
first column of pData does not match the names of the folders containing the ballgown data.
In addition: Warning message:
In ballgown(dataDir = "/fast/users/a123456/Ballgown/prr_bulk", :
Rows of pData did not seem to be in the same order as the columns of the expression data.
This is how I called the ballgown () function:
bg <- ballgown(dataDir="/fast/users/a123456/Ballgown/prr_bulk", samplePattern="B", pData=pheno_data
-Thanks
Hi Alyssa, Thanks for the suggestion. It was helpful. and I was able to get over that error.