Question

What do you do with the DESeq2 NA results ?. How do you manage them ?

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arfranco ▴ 130

@arfranco-8341

Last seen 10 months ago

European Union

After reading the vignette, I don't actually have a clear idea about what to do with the rows containing NA after a DESeq2 analysis. I am at a loss here.

Can you provide with some hints ?

DESeq2 NA values • 699 views

ADD COMMENT • link updated 7.1 years ago by Michael Love 43k • written 7.1 years ago by arfranco ▴ 130

score 1 · Answer 1 · 2018-01-15

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Michael Love 43k

@mikelove

Last seen 2 days ago

United States

These can be ignored for the purpose of building a FDR bounded set of DE genes. The NA as you know represent genes with large count outliers or genes with too low signal for DE detection.

ADD COMMENT • link 7.1 years ago Michael Love 43k