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Question: What do you do with the DESeq2 NA results ?. How do you manage them ?
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gravatar for arfranco
5 weeks ago by
arfranco120
European Union
arfranco120 wrote:

After reading the vignette, I don't actually have a clear idea about what to do with the rows containing NA after a DESeq2 analysis. I am at a loss here.

Can you provide with some hints ?

ADD COMMENTlink modified 5 weeks ago by Michael Love16k • written 5 weeks ago by arfranco120
1
gravatar for Michael Love
5 weeks ago by
Michael Love16k
United States
Michael Love16k wrote:

These can be ignored for the purpose of building a FDR bounded set of DE genes. The NA as you know represent genes with large count outliers or genes with too low signal for DE detection.

ADD COMMENTlink written 5 weeks ago by Michael Love16k
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