What do you do with the DESeq2 NA results ?. How do you manage them ?
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arfranco ▴ 130
@arfranco-8341
Last seen 21 hours ago
European Union

After reading the vignette, I don't actually have a clear idea about what to do with the rows containing NA after a DESeq2 analysis. I am at a loss here.

Can you provide with some hints ?

DESeq2 NA values • 460 views
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@mikelove
Last seen 3 hours ago
United States

These can be ignored for the purpose of building a FDR bounded set of DE genes. The NA as you know represent genes with large count outliers or genes with too low signal for DE detection.

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