Hello!
I'm trying to correlate the expression of PCGs and the adjacent lncRNAs within the same tissue using TPM values. My input is a matrix 496 TPM of one column where the first 256 rows are lncRNAs and the remaining are PCGs. Gene names are specified as rownames.
What is the best approach? I tried the bioconductor package LINC with the function linc() giving as input the matrix here attached and the TRUE/FALSE vertor but I got an error
Thanks
Ed
This is the input matrix:
str(input)
num [1:496, 1] 15.4 7.6 50.9 24.9 17.6 ...
- attr(*, "dimnames")=List of 2
..$ : chr [1:496] "MSTRG.2537.1" "MSTRG.11169.1" "MSTRG.27321.1" "MSTRG.13970.1" ...
..$ : chr "V1"