Question

treeio installation problem

1

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anabento ▴ 10

@anabento-12306

Last seen 7.8 years ago

Hi I have R version 3.3.2. I tried to install treeio and it gives me an error:

BioC_mirror: https://bioconductor.org
Using Bioconductor 3.4 (BiocInstaller 1.24.0), R 3.3.2 (2016-10-31).
Installing package(s) ‘treeio’
Warning message:
package ‘treeio’ is not available (for R version 3.3.2)

I need to install it as Im trying to use ggtree fro BEAST trees

Thanks

Ana

software error • 2.3k views

ADD COMMENT • link updated 2.4 years ago by an.gorohovski • 0 • written 7.8 years ago by anabento ▴ 10

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I have exactly the same problem!!

ADD REPLY • link 6.7 years ago melisa.eliana.magallanes • 0

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If your problem i exactly the same, including using Bioconductor version 3.4, then the solution is as James mentions below -- update to a current version of R and Bioconductor. If you are using a current version of R and Bioconductor, please post the full transcript of your attempt to install the package.

ADD REPLY • link 6.7 years ago Martin Morgan 25k

score 1 · Answer 1 · 2017-02-08

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James W. MacDonald 67k

@james-w-macdonald-5106

Last seen 1 day ago

United States

You need the devel version of Bioconductor to use packages that are still only in devel.

ADD COMMENT • link 7.8 years ago James W. MacDonald 67k

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Get the released version from Bioconductor:

try http:// if https:// URLs are not supported

if (!requireNamespace("BiocManager", quietly=TRUE)) install.packages("BiocManager")

BiocManager::install("BiocUpgrade") ## you may need this

BiocManager::install("treeio") Or the development version from github:

install.packages("devtools")

devtools::install_github("GuangchuangYu/treeio")

ADD REPLY • link 2.4 years ago an.gorohovski • 0