I am trying to use your R package clusterprofiler. My question is with regards to groupGO function. I was wondering what would be a good value to use for "level" attribute in the function. Or is there a way to arrive at the most optimal value for the attribute "level".
ggo <- groupGO(gene = as.character(subset_aggdf$annot.gene_id),
OrgDb = org.Mm.eg.db,
ont = "MF",
level = 10,
readable = TRUE)