Question

CAGEr - How to change plot axis range in CAGEr

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Tobias Hohenauer ▴ 10

@tobias-hohenauer-6686

Last seen 9.6 years ago

Dear all, when using the functions > quantilePositions(cage.all, clusters = "tagClusters", qLow = 0.1, qUp = 0.9) > plotInterquantileWidth(cage.all, clusters = "tagClusters", tpmThreshold = 10, qLow = 0.1, qUp = 0.9) in the package CAGEr, I would like to adjust the range of the x-axis, which I believe is somehow set to a fixed 150 bp. If I was to change that to 100 bp for example, how would that work? Thank you very much for your help! Best, Tobias -- Tobias Hohenauer, PhD GCNA, Disease Mechanism Research Core RIKEN Brain Science Institute 2-1 Hirosawa, Wako-shi 351-0198 Japan

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ADD COMMENT • link updated 6.0 years ago by Charles Plessy ▴ 180 • written 9.7 years ago by Tobias Hohenauer ▴ 10

score 0 · Answer 1 · 2018-05-01

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Entering edit mode

Charles Plessy ▴ 180

@charles-plessy-7857

Last seen 7 months ago

Japan

Hi Tobias,

plotInterquantileWidth has a a xlim parameter that takes a pair of values representing the boundaries of the histogram to be plotted. In your case for instance, you would need to pass xlim = c(0,100).

ADD COMMENT • link 6.0 years ago Charles Plessy ▴ 180