Question: CAGEr - How to change plot axis range in CAGEr
0
4.8 years ago by
Tobias Hohenauer10 wrote:
Dear all, when using the functions > quantilePositions(cage.all, clusters = "tagClusters", qLow = 0.1, qUp = 0.9) > plotInterquantileWidth(cage.all, clusters = "tagClusters", tpmThreshold = 10, qLow = 0.1, qUp = 0.9) in the package CAGEr, I would like to adjust the range of the x-axis, which I believe is somehow set to a fixed 150 bp. If I was to change that to 100 bp for example, how would that work? Thank you very much for your help! Best, Tobias -- Tobias Hohenauer, PhD GCNA, Disease Mechanism Research Core RIKEN Brain Science Institute 2-1 Hirosawa, Wako-shi 351-0198 Japan
brain cager • 422 views
modified 12 months ago by Charles Plessy90 • written 4.8 years ago by Tobias Hohenauer10
Answer: CAGEr - How to change plot axis range in CAGEr
0
12 months ago by
Japan
Charles Plessy90 wrote:

Hi Tobias,

plotInterquantileWidth has a a xlim parameter that takes a pair of values representing the boundaries of the histogram to be plotted.  In your case for instance, you would need to pass xlim = c(0,100).