Question: CAGEr - How to change plot axis range in CAGEr
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gravatar for Tobias Hohenauer
5.0 years ago by
Tobias Hohenauer10 wrote:
Dear all, when using the functions > quantilePositions(cage.all, clusters = "tagClusters", qLow = 0.1, qUp = 0.9) > plotInterquantileWidth(cage.all, clusters = "tagClusters", tpmThreshold = 10, qLow = 0.1, qUp = 0.9) in the package CAGEr, I would like to adjust the range of the x-axis, which I believe is somehow set to a fixed 150 bp. If I was to change that to 100 bp for example, how would that work? Thank you very much for your help! Best, Tobias -- Tobias Hohenauer, PhD GCNA, Disease Mechanism Research Core RIKEN Brain Science Institute 2-1 Hirosawa, Wako-shi 351-0198 Japan
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ADD COMMENTlink modified 14 months ago by Charles Plessy110 • written 5.0 years ago by Tobias Hohenauer10
Answer: CAGEr - How to change plot axis range in CAGEr
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gravatar for Charles Plessy
14 months ago by
Japan
Charles Plessy110 wrote:

Hi Tobias,

plotInterquantileWidth has a a xlim parameter that takes a pair of values representing the boundaries of the histogram to be plotted.  In your case for instance, you would need to pass xlim = c(0,100).

ADD COMMENTlink written 14 months ago by Charles Plessy110
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