I'm new to RNAseq world and Rstudio in general and I want to analyze a couple of bamfiles from illumina.
So far, I successfully followed tutorials for the analysis of RNAseq like this:
Unfortunately, all the tutorials available start by giving packages and descriptions about how to import into R but none of them shows how to import bamfiles not packaged.
I learned about how to look into bamfile for example by running this commands:
library(Rsamtools) bam1 <-"test.bam" bam1 <-scanBam("test.bam") bam1
so that I can look what's inside but after that I'm stopped because I don't know how to proceed.
I would be super happy to receive some help, just for one step forward.
Thank you very much