Question: Understanding data output of sailfish-cir
gravatar for csijst
18 months ago by
Singapore/National University of Singapore
csijst0 wrote:


I am trying to use the sailfish-cir to quantify circular RNAs in my samples. I ran my paired ended RNAseq samples through BWA-mem and subsequently CIRI. Lastly, I parse it through sailfish-cir.

I have a problem trying to interpret the information. In CIRI’s output, it displays information is in terms of coordinates (e.g., 1:805799|810170) but in sailfish-cir, it is different (e.g., ENST00000641515) shown in the quant.sf file. I am not sure whether I have missed a step so that the representation of the gene "name" is different. Could anyone give me some advice?

Thank you.

ciri sailfish-cir • 195 views
ADD COMMENTlink written 18 months ago by csijst0

Opps, sorry, I noticed my mistake. I have not sorted the information yet. So what I was looking at probably was not the correct information.

ADD REPLYlink written 18 months ago by csijst0
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