Hi,
I am trying to import RSEM output (either gene or transcript level output) using txtimport. However, while running RSEM I used the option of append names which concatenates gene names with gene ids. I am not sure whether that will cause any problem while importing the data using txtimport?
Regards
Gaurav
transcript_id gene_id length effective_length expected_count TPM FPKM
ENSMUST00000000001_Gnai3-001 ENSMUSG00000000001_Gnai3 3262 3075.63 1125.00 7.13
ENSMUST00000000003_Pbsn-001 ENSMUSG00000000003_Pbsn 902 715.63 0.00 0.00
ENSMUST00000114041_Pbsn-002 ENSMUSG00000000003_Pbsn 697 510.65 0.00 0.00
ENSMUST00000000028_Cdc45-001 ENSMUSG00000000028_Cdc45 2143 1956.63 104.34 1.04
ENSMUST00000096990_Cdc45-003 ENSMUSG00000000028_Cdc45 1747 1560.63 84.66 1.06
ENSMUST00000115585_Cdc45-002 ENSMUSG00000000028_Cdc45 832 645.64 0.00 0.00