RSEM output in txtimport
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gat2010 • 0
@gat2010-15968
Last seen 3.4 years ago

Hi,

I am trying to import RSEM output (either gene or transcript level output) using txtimport. However, while running RSEM I used the option of append names which concatenates gene names with gene ids. I am not sure whether that will cause any problem while importing the data using txtimport?

Regards

Gaurav

transcript_id   gene_id length  effective_length        expected_count  TPM     FPKM

ENSMUST00000000001_Gnai3-001    ENSMUSG00000000001_Gnai3        3262    3075.63 1125.00 7.13    

ENSMUST00000000003_Pbsn-001     ENSMUSG00000000003_Pbsn 902     715.63  0.00    0.00    
ENSMUST00000114041_Pbsn-002     ENSMUSG00000000003_Pbsn 697     510.65  0.00    0.00    
ENSMUST00000000028_Cdc45-001    ENSMUSG00000000028_Cdc45        2143    1956.63 104.34  1.04    
ENSMUST00000096990_Cdc45-003    ENSMUSG00000000028_Cdc45        1747    1560.63 84.66   1.06    
ENSMUST00000115585_Cdc45-002    ENSMUSG00000000028_Cdc45        832     645.64  0.00    0.00      

 

RSEM txtimport • 416 views
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