Copy Number plot cnSpec - how to order samples

0

Entering edit mode

cedric.vmdl • 0

@cedricvmdl-15526

Last seen 5.2 years ago

Hi,

I'm using the incredible genvisR package to plot copy number data, using the cnSpec function.
In another script, I did a clustering analysis of this data.

I tried to change the order of the samples appearing in the cnSpec plot, according to the clustering, but couldn't succeed :

- I do not see an argument in the cnSpec function to specify the order.
- I reordered the dataframe used in the cnSpec function, but it generates a plot ordered alphabetically/numerically.

Could someone help me to specify the order of my samples in the cnSpec plot ?

Thanks a lot!

Cedric

genvisr • 1.4k views

ADD COMMENT • link 6.4 years ago cedric.vmdl • 0

0

Entering edit mode

This is not currently a feature in the cnSpec() function, though I think this is an oversight and more control should be given to the end user. I've created an issue for this here: https://github.com/griffithlab/GenVisR/issues/337

Not sure when I'll get around to implementing it though.

ADD REPLY • link 6.4 years ago zlskidmore ▴ 30

0

Entering edit mode

Thank you very much for your quick answer. I really hope you will be able to find some time to add this feature. Thanks again for this great tool, I use it a lot ! Best, Cedric

ADD REPLY • link 6.4 years ago cedric.vmdl • 0

Login before adding your answer.