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genvisr
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440
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GenVisR - adding on genomic positions to CovGen graph
GenVisR
GenCov
22 months ago
Amy_
• 0
3
votes
10
replies
3.1k
views
error in package GenVisR while installing
GenVisR
GenVis
updated 8 months ago by
zlskidmore
▴ 30 • written 2.0 years ago by
abhisikta
• 0
0
votes
1
reply
1.2k
views
Unable to install GenVisR under most recent R / Bioconductor version; waterfall option mainDropMut is not working
Install
mainDropMut
GenVisR
updated 2.1 years ago by
Hervé Pagès
16k • written 2.1 years ago by
Michel
• 0
0
votes
0
replies
1.8k
views
How to generate a waterfall plot of mutations and CNAs that don't overlap
GenVisR
maftools
2.2 years ago
e
• 0
0
votes
1
reply
1.1k
views
Waterfall failing with custom file: Error in `colnames<-`(`*tmp*`, value = c("sample", "gene", "trv_type")) : attempt to set 'colnames' on an obje…
variants
waterfall
GenVisR
updated 3.7 years ago by
zlskidmore
▴ 30 • written 3.7 years ago by
Jeni
▴ 10
0
votes
1
reply
758
views
Adding layer to legend in waterfall plot
GenVisR
ggplot2
waterfall
4.8 years ago
sheneicechang
• 0
0
votes
0
replies
968
views
Output GenVisR mutation frequency data by gene name instead of by sample name
GenVisR
mutation frequency
R
cancer
bioconductor
4.8 years ago
sheneicechang
• 0
0
votes
1
reply
1.1k
views
how to save picture and add title to waterfall GenVisR mutation analyse?
GenVisr
genvisr
waterfall
mutation
updated 5.6 years ago by
zlskidmore
▴ 30 • written 5.7 years ago by
ZihaoXing
• 0
0
votes
1
reply
901
views
Issues with lohSpec
genvisr
lohSpec
6.0 years ago
dharia.priyadarshani
• 0
0
votes
2
replies
1.2k
views
Copy Number plot cnSpec - how to order samples
genvisr
6.2 years ago
cedric.vmdl
• 0
0
votes
4
replies
2.0k
views
GenVisR- cnSpec CNV plot
GenVisR
6.5 years ago
daijieqiong
▴ 10
0
votes
2
replies
1.3k
views
an error in TvTi: package GenVisR
GenVisR
updated 7.5 years ago by
zlskidmore
▴ 30 • written 7.5 years ago by
Bogdan
▴ 670
2
votes
5
replies
2.8k
views
GenVisR Installation error message
genvisR
8.4 years ago
Deep Adhya
▴ 20
13 results • Page
1 of 1
Recent ...
Replies
Comment: 'path' must be string
by
James W. MacDonald
66k
Yes. We already knew that from the error message, and I told you that in my previous email. The point wasn't to figure out *where* the err…
Comment: 'path' must be string
by
cpierce2
• 0
I ran the debugger and this is the line that causes the error: ``` if (any(startsWith(pkcData[["RTS_ID"]][1L], "RTS")) & any(startsWith(pr…
Comment: Generating surrogate variables across multiple variables of interest
by
Robert
• 0
Yes, we have several biomarkers, and a proteomic set, so we are characterizing each biomarker by it's proteomic association(s). The use for…
Comment: Error running tximeta
by
Guido Hooiveld
★ 4.0k
FYI (since I just finalized a run with `salmon`). For each sample (`.`) an output folder is created that contains 3 files (`cmd_info.json`…
Comment: Error running tximeta
by
Michael Love
42k
Tximeta uses the full directory. There are files that give the key information about the transcriptome. It's not a good idea to selectively…
Votes
Question: Deconvolution Methods on RNA-Seq Data (Mixed cell types)
Answer: Understanding how to contrast two treatments in DESeq2
Answer: Understanding how to contrast two treatments in DESeq2
Cannot extract TxFeatures for a defined GRanges object
Limma time series spline help
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Lluís Revilla Sancho
▴ 730
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maltethodberg
▴ 180
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Michael Love
42k
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Leonardo Collado Torres
★ 1.1k
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to
Gordon Smyth
51k
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