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h.burke
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@hburke-15995
Last seen 6.6 years ago
I am unable to load GO.db... see code: Please can you advise a fix. Many thanks.
> source("https://bioconductor.org/biocLite.R") Bioconductor version 3.7 (BiocInstaller 1.30.0), ?biocLite for help > biocLite("GO.db") BioC_mirror: https://bioconductor.org Using Bioconductor 3.7 (BiocInstaller 1.30.0), R 3.5.0 (2018-04-23). Installing package(s) ‘GO.db’ installing the source package ‘GO.db’ trying URL 'https://bioconductor.org/packages/3.7/data/annotation/src/contrib/GO.db_3.6.0.tar.gz' Content type 'application/x-gzip' length 31763273 bytes (30.3 MB) downloaded 30.3 MB '\\filestore.soton.ac.uk\users\hb6g13' CMD.EXE was started with the above path as the current directory. UNC paths are not supported. Defaulting to Windows directory. '\\filestore.soton.ac.uk\users\hb6g13\mydocuments\R\R-3.5.0' is not recognized as an internal or external command, operable program or batch file. In R CMD INSTALL The downloaded source packages are in ‘C:\Users\hb6g13\AppData\Local\Temp\Rtmp0MpTwm\downloaded_packages’ Old packages: 'bit', 'graph', 'MASS', 'mvtnorm', 'purrr', 'rlang', 'stringi', 'survival' Update all/some/none? [a/s/n]: n Warning message: In install.packages(pkgs = doing, lib = lib, ...) : installation of package ‘GO.db’ had non-zero exit status > traceback() No traceback available > sessionInfo() R version 3.5.0 (2018-04-23) Platform: x86_64-w64-mingw32/x64 (64-bit) Running under: Windows >= 8 x64 (build 9200) Matrix products: default locale: [1] LC_COLLATE=English_United Kingdom.1252 LC_CTYPE=English_United Kingdom.1252 LC_MONETARY=English_United Kingdom.1252 [4] LC_NUMERIC=C LC_TIME=English_United Kingdom.1252 attached base packages: [1] stats graphics grDevices utils datasets methods base other attached packages: [1] BiocInstaller_1.30.0 loaded via a namespace (and not attached): [1] compiler_3.5.0 tools_3.5.0 > .libPaths() [1] "\\\\filestore.soton.ac.uk/users/hb6g13/mydocuments/R/R-3.5.0/library" |
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