Entering edit mode
h.burke
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@hburke-15995
Last seen 7.4 years ago
I am unable to load GO.db... see code: Please can you advise a fix. Many thanks.
> source("https://bioconductor.org/biocLite.R")
Bioconductor version 3.7 (BiocInstaller 1.30.0), ?biocLite for help
> biocLite("GO.db")
BioC_mirror: https://bioconductor.org
Using Bioconductor 3.7 (BiocInstaller 1.30.0), R 3.5.0 (2018-04-23).
Installing package(s) ‘GO.db’
installing the source package ‘GO.db’
trying URL 'https://bioconductor.org/packages/3.7/data/annotation/src/contrib/GO.db_3.6.0.tar.gz'
Content type 'application/x-gzip' length 31763273 bytes (30.3 MB)
downloaded 30.3 MB
'\\filestore.soton.ac.uk\users\hb6g13'
CMD.EXE was started with the above path as the current directory.
UNC paths are not supported. Defaulting to Windows directory.
'\\filestore.soton.ac.uk\users\hb6g13\mydocuments\R\R-3.5.0' is not recognized as an internal or external command,
operable program or batch file.
In R CMD INSTALL
The downloaded source packages are in
‘C:\Users\hb6g13\AppData\Local\Temp\Rtmp0MpTwm\downloaded_packages’
Old packages: 'bit', 'graph', 'MASS', 'mvtnorm', 'purrr', 'rlang', 'stringi', 'survival'
Update all/some/none? [a/s/n]:
n
Warning message:
In install.packages(pkgs = doing, lib = lib, ...) :
installation of package ‘GO.db’ had non-zero exit status
> traceback()
No traceback available
> sessionInfo()
R version 3.5.0 (2018-04-23)
Platform: x86_64-w64-mingw32/x64 (64-bit)
Running under: Windows >= 8 x64 (build 9200)
Matrix products: default
locale:
[1] LC_COLLATE=English_United Kingdom.1252 LC_CTYPE=English_United Kingdom.1252 LC_MONETARY=English_United Kingdom.1252
[4] LC_NUMERIC=C LC_TIME=English_United Kingdom.1252
attached base packages:
[1] stats graphics grDevices utils datasets methods base
other attached packages:
[1] BiocInstaller_1.30.0
loaded via a namespace (and not attached):
[1] compiler_3.5.0 tools_3.5.0
> .libPaths()
[1] "\\\\filestore.soton.ac.uk/users/hb6g13/mydocuments/R/R-3.5.0/library"
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