How to do a GEO query using keywords in R?
I found a few publications but they use the GSE accession number:
GEO_DATASETS <- c("GSE73835")
eset <- getGEOdataObjects(GEO_DATASETS)
Thanks a lot.
What exactly are you asking? You say something about keywords, but then you try to use a GSE ID, using a non-existent function.
You could either use the Bioconductor GEOmetadb package, a web interface query on the NCBI website, or eUtils. There are other third-party options as well as similar functionality at EBI.
Just guessing that this is what you want:
eset = getGEO('GSE73835')[]
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