Using tximport on RSEM abundance date
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@raeganlynn123-16407
Last seen 3.3 years ago

I have abundance data generated using RSEM. The data is organized into columns with the transcript and estimated counts. I am trying to use tximport to import the files in R into a matrix with the counts, so I can normalize them using EdgeR. I’m having some problems using tximport. Has anyone used this pipeline for RSEM abundance data?

rnaseq rsem tximport • 352 views
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@mikelove
Last seen 2 days ago
United States

Please share your code and session information

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