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Kimpel, Mark W
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890
@kimpel-mark-w-727
Last seen 10.0 years ago
I am having a problem with rbind in annaffy. I have a very simple
annaffy table that, for the sake of illustration, I have tried to
duplicate by row binding to itself (this is a simplification of a more
complex problem).
Here is my code:
affytable.temp<-subset.affytable.on.GO.func(affytable=table,
GO.TERM=common.go.hyper$"GO ID"[i], GO.Desc="GO Term")
bound<-rbind(affytable.temp, affytable.temp)
and the output:
> bound
affytable.temp
affytable.temp
I do not have this problem with merge, which works just fine.
SessionInfo (with all packages just updated):
R version 2.2.0, 2005-10-06, i386-pc-mingw32
attached base packages:
[1] "splines" "tools" "methods" "stats" "graphics"
"grDevices" "utils" "datasets" "base"
other attached packages:
rat2302cdf affy annaffy KEGG biomaRt XML
RMySQL DBI rat2302 hgu95av2 GOstats multtest
genefilter
survival
"1.5.1" "1.8.1" "1.2.0" "1.8.1" "1.4.0" "0.97-8"
"0.5-5" "0.1-9" "1.10.0" "1.10.0" "1.4.0" "1.8.0"
"1.8.0" "2.20"
xtable RBGL annotate GO graph Ruuid
Biobase cluster RWinEdt
"1.3-0" "1.6.0" "1.8.0" "1.6.5" "1.8.0" "1.8.0"
"1.8.0"
"1.10.2" "1.7-3"
Could this be a problem with R losing track of which "rbind" function
to
use (i.e. generic or annaffy), is annaffy broke, or am I doing
something
wrong?
Thanks,
Mark
Mark W. Kimpel MD
Official Business Address:
Department of Psychiatry
Indiana University School of Medicine
Biotechnology, Research, & Training Center
1345 W. 16th Street
Indianapolis, IN 46202