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ghmdsr
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@ghmdsr-15634
Last seen 6.3 years ago
>libraryUniProt.ws)
Error: package or namespace load failed for ‘UniProt.ws’:
객체 ‘dims’들은 'namespace:BiocGenerics'에 의해서 내보내어지지 않았습니다
How can I solve this problem?? please help me
Does
BiocInstaller::biocValid()
suggest problems that can be solved by installing current versions of R and Bioconductor?I did
>BiocInstaller ::biocValid()
The result is :
Out-of-date packages
Package LibPath Installed Built ReposVer
BiocGenerics "BiocGenerics" "C:/Users/ghmdsr/Documents/R/win-library/3.5" "0.26.0" "3.5.0" "0.27.1"
stringi "stringi" "C:/Users/ghmdsr/Documents/R/win-library/3.5" "1.1.7" "3.5.0" "1.2.4"
Repository
BiocGenerics "https://bioconductor.org/packages/3.8/bioc/src/contrib"
stringi "https://cran.rstudio.com/src/contrib"
so I updated stringi/ BiocGenerics. stingi was updated well. but BiocGenerics wasn't updated.
the error message is :
> BiocManager::install('BioGenerics')
Bioconductor version 3.8 (BiocManager 1.30.2), R 3.5.1 (2018-07-02)
Installing package(s) 'BioGenerics'
Update old packages: 'BiocGenerics', 'stringi'
Update all/some/none? [a/s/n]:
a
There is a binary version available but the source version is later:
binary source needs_compilation
stringi 1.1.7 1.2.4 TRUE
Binaries will be installed
trying URL 'https://bioconductor.org/packages/3.8/bioc/bin/windows/contrib/3.5/BiocGenerics_0.27.1.zip'
Content type 'application/zip' length 749740 bytes (732 KB)
downloaded 732 KB
trying URL 'https://cran.rstudio.com/bin/windows/contrib/3.5/stringi_1.1.7.zip'
Content type 'application/zip' length 14368013 bytes (13.7 MB)
downloaded 13.7 MB
package ‘BiocGenerics’ successfully unpacked and MD5 sums checked
package ‘stringi’ successfully unpacked and MD5 sums checked
The downloaded binary packages are in
C:\Users\ghmdsr\AppData\Local\Temp\RtmpK0tYFi\downloaded_packages
Warning message:
package ‘BioGenerics’ is not available (for R version 3.5.1)
The warning message is because there's a typo in your install command. You've put 'BioGenerics' rather than 'BiocGenerics'.