Entering edit mode
thindmarsmission
▴
10
@thindmarsmission-17577
Last seen 6.1 years ago
Hi!!
I want to plot trends between genes across different conditions from my normalized count matrix (featurecount-EdgeR).
I was using "csCluster" in cummerbund. Now I switched to this pipeline and I am wondering, if similar pacakage or tool is available for plotting those kinds of trends. eg : below image (ref:cummerbund kellis lab)
Thank you, but for clustering the genes having similar trends throughout, what I can use ? I am new to this field. sorry for stupid questions.
The
csCluster
function usespam
(partitioning around medioids) from the cluster package.