Showing : visualization • reset
5
votes
11
replies
431
views
Visualization of negative log CPM values
Visualization Normalization ggplot2 edgeR
written 12 days ago by ▴ 20
0
votes
2
replies
404
views
ggplot2 bar plot
R Visualization ggplot2
8 months ago Jitendra ▴ 10
4
votes
6
replies
798
views
How to best visualize multi-level transcriptomics experiment data?
ggplot2 Transcriptomics Visualization R limma
12 months ago mohammedtoufiq91 ▴ 10
0
votes
1
reply
491
views
Unable to label in Enhanced Volcano
Visualization
updated 17 months ago by 3.8k • written 17 months ago by • 0
0
votes
4
replies
865
views
rtracklayer can't access hg38 on UCSC?
rtracklayer Visualization
updated 19 months ago by 16k • written 19 months ago by • 0
1
vote
1
reply
784
views
News: SBGNview: Data Analysis, Integration and Visualization on 5000+ Pathways/3000+ Species
SBGNview pathways SBGNview.data pathview visualization
2.3 years ago • updated 2.2 years ago Luo Weijun ★ 1.6k
1
vote
3
replies
1.1k
views
copy number variation analysis (CNV)
copynumber plot visualization NGS gene
updated 2.5 years ago by ▴ 180 • written 2.6 years ago by • 0
2
votes
2
replies
835
views
Can't display protein domain data from UCSC table unipDomain using Gviz
Gviz protein visualization UcscTrack protein domains
updated 2.7 years ago by 63k • written 2.7 years ago by ▴ 10
5
votes
11
replies
976
views
Visualization tool for GC-bias in SE data?
GC-bias ALPINE visualization
updated 2.9 years ago by 40k • written 2.9 years ago by ▴ 20
0
votes
0
replies
479
views
Sample grouping (phenoData) and visualization in R package- HtqPCR
HtqPCR grouping visualization R phenoData
3.8 years ago mohammedtoufiq91 ▴ 10
0
votes
9
replies
1.3k
views
visualizing alignment without realignment
msa alignment visualization
updated 4.3 years ago by 25k • written 4.3 years ago by • 0
0
votes
8
replies
8.6k
views
How to generate a volcano plot when p-values from DESeq2 are zero?
deseq2 pvalue visualization enhancedvolcano rnaseq
updated 4.3 years ago by 40k • written 4.3 years ago by • 0
2
votes
2
replies
795
views
What can be done to separate the healthy and patient samples in PCA plot and Distance matrix
deseq2 PCAplot Visualization
updated 4.4 years ago by 40k • written 4.4 years ago by • 0
1
vote
2
replies
902
views
Package for custom visualization of multiple sequence alignment
MSA visualization
updated 4.6 years ago by ▴ 20 • written 4.6 years ago by • 0
3
votes
3
replies
768
views
how to plot trends for differentialy expressed genes from normalized count matrix (EdgeR)
edger clustering visualization
updated 4.7 years ago by 63k • written 4.7 years ago by • 0
0
votes
0
replies
730
views
Netbiov vertex.color vector length error
netowrk visualization
4.9 years ago Wojeff • 0
0
votes
4
replies
1.1k
views
Deseq2 problem visualizing gene expression with batch corrected values
deseq2 limma differential expression visualization
updated 5.0 years ago by 40k • written 5.0 years ago by • 0
6
votes
12
replies
6.3k
views
EdgeR: Explaning dispersion types to newbies
edger dispersion estimatedispersions visualization teaching
updated 5.0 years ago by ★ 28k • written 5.0 years ago by ▴ 20
0
votes
0
replies
945
views
pathview and gage server connection issue
pathview gage pathway analysis kegg visualization
5.3 years ago Luo Weijun ★ 1.6k
0
votes
0
replies
783
views
spotSegmentation package: How to "display the entire block of segmented spots at the end of processing"
spotsegmentation argument visualization
5.7 years ago rene_houtman • 0
2
votes
4
replies
1.3k
views
chimeraviz - import own fusion file for visualization
visualization chimeraviz
updated 22 months ago by • 0 • written 5.9 years ago by ▴ 10
0
votes
0
replies
1.1k
views
News: Pathview Web server published in NAR
pathway analysis visualization data integration omics pathview News
6.1 years ago Luo Weijun ★ 1.6k
0
votes
1
reply
927
views
Change DEXSeq plot: Intron length/width and genes from - strand
rnaseq r dexseq visualization
6.1 years ago aleipz • 0
0
votes
3
replies
1.8k
views
RNAseq read coverage plot: What tool?
rnaseq visualization plotcoveragehist
updated 6.1 years ago by ★ 1.3k • written 6.1 years ago by ▴ 120
2
votes
2
replies
3.3k
views
How can I visualize Gene Set Enrichment Results from gseGo fun. (clusterProfiler)?
ggplot2 clusterprofiler visualization gseGo
6.2 years ago • updated 2.6 years ago tcalvo ▴ 90
0
votes
2
replies
1.1k
views
DMRcate DMR.plot Turn Off Group Means
dmrcate visualization
updated 6.4 years ago by ▴ 140 • written 6.4 years ago by • 0
0
votes
7
replies
1.7k
views
Bioconductor 2.6 is released
Sequencing Microarray Visualization Infrastructure PROcess beadarray keggorthology eisa
updated 6.8 years ago by • 0 • written 13.1 years ago by 1.6k
1
vote
0
replies
1.2k
views
News: BioCAsia, 4th November 2016, Brisbane, Australia
conference transcription epigenomics visualization infrastructure News
6.9 years ago Matthew Ritchie ▴ 1000
0
votes
1
reply
989
views
Survey on interactive visualization and Bioconductor
visualization epivizr
7.0 years ago Hector Corrada Bravo ▴ 60
0
votes
1
reply
1.2k
views
ChIPseeker gene body plot
chipseeker visualization
updated 7.0 years ago by ★ 1.2k • written 7.0 years ago by ▴ 40
7
votes
0
replies
3.2k
views
Tutorial: New edX "Data analysis for Life Sciences" module: High performance computing for reproducible genomics
annotation genomicranges visualization docker shiny Tutorial
7.2 years ago Vincent J. Carey, Jr. 6.6k
0
votes
0
replies
1.4k
views
Pathview Web Server: user friendly pathway visualization and data integration
pathview pathway analysis visualization web server omics data
7.4 years ago Weijun Luo • 0
3
votes
5
replies
1.9k
views
Explanation of warning output of pathview regarding visualization of a KEGG pathway with Graphviz format
pathview clusterProfiler KEGGpath visualization Graphviz
updated 7.6 years ago by ★ 1.6k • written 7.6 years ago by ▴ 810
0
votes
5
replies
2.1k
views
Gene Symbol with Pathview
pathview bioconductor kegg visualization
updated 7.6 years ago by ★ 1.6k • written 7.6 years ago by • 0
3
votes
0
replies
1.4k
views
News: BioCAsia, 8 Sept 2015, Tokyo
sequencing transcription epigenomics visualization infrastructure News
8.0 years ago • updated 7.8 years ago Matthew Ritchie ▴ 1000
0
votes
0
replies
1.2k
views
flowWorkspace and ggcyto
flowworkspace flow cytometry visualization
7.8 years ago Jiang, Mike ★ 1.3k
11
votes
0
replies
5.2k
views
Tutorial: Introduction to Bioconductor for high-throughput sequence analysis
GenomicRanges Annotation RNAseq visualization Tutorial
7.9 years ago Martin Morgan 25k
8
votes
0
replies
3.2k
views
Tutorial: Statistics and Computing in Genome Science (CSAMA) Course Material
rnaseq chipseq visualization metagenomics proteomics Tutorial
7.9 years ago Martin Morgan 25k
1
vote
3
replies
1.6k
views
Visualizing gene counts and variance stabilization
deseq2 rnaseq variancestabilizingtransformation visualization
updated 8.0 years ago by 40k • written 8.0 years ago by ▴ 40
0
votes
2
replies
2.9k
views
Mapping gene IDs to gene symbol of KEGG pathways with "Pathview"
Pathview KEGG annotation gene symbol visualization
updated 8.0 years ago by ★ 1.6k • written 8.0 years ago by ▴ 120
0
votes
1
reply
1.3k
views
Graphic representation of mroast results
mroast visualization
8.0 years ago Elena Serrano ▴ 30
1
vote
2
replies
2.3k
views
gene expression visualization: lineplot with ggplot2
ggplot2 lineplot visualization
updated 8.0 years ago by ▴ 180 • written 8.0 years ago by ▴ 120
0
votes
0
replies
1.1k
views
Circos Styling plots is now easy with canceR package
canceR visualization omiccircos
8.1 years ago kmezhoud ▴ 10
1
vote
1
reply
1.2k
views
Visualizing Structural variants
visualization SV
updated 8.1 years ago by 6.6k • written 8.1 years ago by ▴ 190
0
votes
0
replies
1.5k
views
Job: Post-Doctoral Research Fellow - Patient Genomics Data Visualization
visualization genomics personalized medicine systemsbiology js Job
8.2 years ago Hamid Bolouri ▴ 50
0
votes
7
replies
4.3k
views
Visualization of rownames in the heatmap.2 function for selected DE genes of a microarray dataset
heatmap.2 gplots differential gene expression visualization
8.2 years ago svlachavas ▴ 810
1
vote
0
replies
1.6k
views
Job: PhD position - Heidelberg: Bioinformatic analysis of high-throughput and image-based RNAi screening data
high-throughput screening RNAi image analysis data integration visualization Job
8.2 years ago e.schmidt ▴ 10
0
votes
0
replies
1.1k
views
News: OmicCircos was updated
visualization omiccircos News
8.2 years ago Hu, Ying NIH/NCI [E] ▴ 50
0
votes
6
replies
2.5k
views
Gviz::plotTracks for BiomartGeneRegionTrack() produces empty plots
gviz visualization
8.4 years ago Asta Laiho ▴ 120
2
votes
0
replies
963
views
Interactive Visualization with Epivizr (what's new in this release)
epivizr visualization
8.6 years ago Hector Corrada Bravo ▴ 60
50 results • Page 1 of 1
Recent ...
Replies
Answer: multiple filters in biomaRt by RuBBiT0 ▴ 10
First, yes, one gene could be related to several GO ID, and the result is based on the annotation package you use. Second, could you pro…
Comment: Diffbind "No genome detected" by kyliecode • 0
Hi Dr. Stark, Thanks very much for your reply! The bam files were output from nf-core/chipseq pipeline and for some reason, they do not ha…
Answer: Discrepancy between DESeq2 files produced in Galaxy and R(RStudio) by Michael Love 40k
I guess that Galaxy may be using some kind of LFC shrinkage, but without seeing their code I wouldn't know for sure. Shrinkage generally…
Comment: TCGAbiolinks cannot find bcr_patient_barcode by Habil Zare ▴ 170
I checked your example with the devel version 2.29.6 on Bioc and it worked fine. Thanks for the fix!
Answer: error in ChAMP loading file by jenniferbrowngates • 0
I got a lot of information from this website about different topics which is beneficial for me too so I thank this site and also suggest a …
Votes
Answer: Using PEER to identify hidden confounders in RNA-seq data (not working)
Comment: Error: biomaRt has encountered an unexpected server error.
Comment: Interpret plot from DiffBind
Comment: Interpret plot from DiffBind
Comment: Interpret plot from DiffBind
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