Installation update of Bioconductor and R
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jpenadi1 • 0
@jpenadi1-17665
Last seen 6.0 years ago
Hi, I am trying to install Bioconductor and I would like to have all the packages updated. What should I do I already updated the R packages.
Thank you for the help
Here is my code 

update with biocLite()

Error: 6 package(s) out of date
> try http:// if https:// URLs are not supported
Error: unexpected symbol in "try http"
> source("https://bioconductor.org/biocLite.R")
Bioconductor version 3.4 (BiocInstaller 1.24.0), ?biocLite for help
A new version of Bioconductor is available after installing the most recent version of R; see
  http://bioconductor.org/install
> biocLite("BiocUpgrade")
Error: Bioconductor version 3.4 cannot be upgraded with R version 3.3.3
> ?BiocUpgrade
bioconductor • 569 views
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Entering edit mode
Mike Smith ★ 6.5k
@mike-smith
Last seen 2 hours ago
EMBL Heidelberg

You're using R version 3.3.3.  That's is pretty old now, and so newer Bioconductor releases are not compatible with it.  My first suggestion would be to install the latest version of R, which is currently 3.5.1, and then either upgrade the Bioconductor packages or install them afresh.

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