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bioconductor
•
reset
3
votes
15
replies
2.5k
views
News:
List of Deprecated Packages for Bioc3.18
Deprecation
devel
Bioconductor
Devel
8 months ago • updated 13 hours ago
shepherl
3.8k
1
vote
2
replies
169
views
supportedOrganisms() in goseq producing Error in names(trackIds)
goseq
Bioconductor
rtracklayer
11 days ago
thomas
• 0
1
vote
0
replies
192
views
News:
Nominations for Bioconductor Awards 2024!
Recognition
Awards
Bioconductor
Bioc2024
26 days ago • updated 13 days ago
shepherl
3.8k
0
votes
1
reply
192
views
News:
BioC2024 abstract submission is open!
BioC2024
Conference
Bioconductor
updated 1 hour ago by
howell
• 0 • written 28 days ago by
Maria Doyle
▴ 70
0
votes
0
replies
109
views
News:
BioC2024 registration is now open!
BioC2024
Conference
Bioconductor
Community
17 days ago
Maria Doyle
▴ 70
6
votes
11
replies
742
views
Packages don't update, but no error or warning is thrown
Bioconductor
6 weeks ago • updated 4 weeks ago
gernophil
• 0
0
votes
0
replies
106
views
News:
EuroBioC2024 abstract submission is open!
Conference
Bioconductor
EuroBioC2024
4 weeks ago
Maria Doyle
▴ 70
2
votes
0
replies
163
views
News:
Upholding our core values: a reminder of the Bioconductor Code of Conduct
Bioconductor
4 weeks ago
Maria Doyle
▴ 70
0
votes
1
reply
153
views
Bioconductor: Won't Update to 3.18 with Default Command
Bioconductor
updated 5 weeks ago by
Lluís Revilla Sancho
▴ 730 • written 5 weeks ago by
vanbelj
▴ 20
1
vote
4
replies
326
views
Can't post a question containing code?
Bioconductor
updated 4 weeks ago by
Lluís Revilla Sancho
▴ 730 • written 5 weeks ago by
DS
▴ 10
0
votes
1
reply
148
views
Limitation on single file size and package size when developing Bioc package
packagedevelopment
datalimit
Bioconductor
updated 6 weeks ago by
Hervé Pagès
16k • written 6 weeks ago by
Xin Wang
• 0
0
votes
0
replies
135
views
News:
Note about packages submitted for Bioconductor 3.19
Release
Submission
release
Bioconductor
7 weeks ago
shepherl
3.8k
2
votes
1
reply
199
views
News:
"Edit" button not working
Bioconductor
Website
SupportSite
updated 6 weeks ago by
Lori
• 0 • written 8 weeks ago by
shepherl
3.8k
2
votes
2
replies
242
views
How to contact Bioconductor's test host?
Bioconductor
updated 8 weeks ago by
Hervé Pagès
16k • written 8 weeks ago by
Marek Gierlinski
▴ 30
0
votes
4
replies
561
views
Bioconductor installation
Bioconductor
written 10 weeks ago by
Akhil
• 0
4
votes
3
replies
266
views
Bioconductor code browser time out
Bioconductor
updated 9 weeks ago by
Mike Smith
★ 6.4k • written 9 weeks ago by
Marek Gierlinski
▴ 30
3
votes
1
reply
236
views
News:
Bioconductor.org has a new look!
Bioconductor
Website
written 10 weeks ago by
shepherl
3.8k
0
votes
0
replies
192
views
News:
Online course - FLOW CYTOMETRY DATA ANALYSIS WITH R/BIOCONDUCTOR
Bioconductor
FlowCytometryData
FlowCytometry
12 weeks ago
info
▴ 10
0
votes
3
replies
1.5k
views
Error in library(oligo) : package or namespace load failed for ‘oligoClasses’
R
oligoClasses
Oligoclass
Bioconductor
Oligo
written 3.1 years ago by
tanya
• 0
1
vote
5
replies
2.1k
views
pd.mogene.2.0st Error Installing in R 3.1.2
oligo
microarray
r
bioconductor
written 9.1 years ago by
chandlerjd58
▴ 10
5
votes
1
reply
375
views
News:
Bioconductor 3.18 is Released!
Packages
Bioconductor
Release
Software
written 4 months ago by
shepherl
3.8k
0
votes
0
replies
186
views
Normalising processed Proteomics data in R
Bioconductor
Proteomics
3 months ago
Joshua
• 0
0
votes
6
replies
2.0k
views
Error when Installing BioConductor Package ('affy')
Bioconductor
Install
affy
updated 4 months ago by
ATpoint
★ 3.9k • written 15 months ago by
laujihen
• 0
2
votes
0
replies
424
views
News:
Bioconductor's Transition Away from Twitter/X
Bioconductor
4 months ago
Maria Doyle
▴ 70
0
votes
0
replies
222
views
News:
CRAN downtime
BiocManager
Bioconductor
4 months ago
shepherl
3.8k
2
votes
4
replies
510
views
Import a Bioconductor package that is only used in a vignette/.Rmd script
Bioconductor
PackageType
BiocStyle
updated 4 months ago by
shepherl
3.8k • written 4 months ago by
lavanilla44
• 0
0
votes
1
reply
667
views
Job:
Bioinformatics Laboratory Head in AI or machine learning (WEHI, Australia)
bioconductor
artificialintelligence
JobPosting
machinelearning
6 months ago • updated 4 months ago
Gordon Smyth
50k
0
votes
3
replies
452
views
Support for installation and usage of TxDb.Hsapiens.UCSC.hg19.knownGene package in R version 4.2.2
Bioconductor
BiocPkgTools
4 months ago
blessybo
• 0
0
votes
1
reply
300
views
Advice needed on package using online databases (fails CHECK when database is down)
Bioconductor
updated 4 months ago by
shepherl
3.8k • written 4 months ago by
Marek Gierlinski
▴ 30
4
votes
10
replies
1.7k
views
Archives prior to 3.15 gone
archive
bioconductor
updated 4 months ago by
shepherl
3.8k • written 18 months ago by
Florian Finkernagel
▴ 30
0
votes
0
replies
304
views
News:
COURSE - Developing R/Bioconductor Packages for Genomics
Bioconductor
PackageTypeData
PackageType
5 months ago
info
▴ 10
2
votes
1
reply
777
views
limma::topTable with adjust.method=NULL is not BH corrected (manual is inconsistent with behavior?)
Bioconductor
biocon
limma
updated 5 months ago by
Gordon Smyth
50k • written 5 months ago by
ningyuan
• 0
2
votes
11
replies
772
views
Error MakeOrgPackagefromNCBI
Bioconductor
updated 5 weeks ago by
Guido Hooiveld
★ 3.9k • written 5 months ago by
cinzia.spagnoli
• 0
5
votes
2
replies
594
views
ComBat_seq function in sva package does not return a matrix
sva
ComBat
ComBat-seq
Bioconductor
ComBat_seq
5 months ago
Federico
▴ 10
0
votes
2
replies
531
views
For R version 4.0.2 and Biconductor version 3.11, clusterProfiler is not working
Bioconductor
clusterProfiler
updated 5 months ago by
James W. MacDonald
65k • written 5 months ago by
nilanjanamani88
• 0
0
votes
2
replies
938
views
Bioconductor version cannot be validated
Bioconductor
updated 4 months ago by
Manuel
• 0 • written 6 months ago by
xlu.cpu
• 0
0
votes
1
reply
2.9k
views
Bioconductor version cannot be validated
Bioconductor
Annotation
Ann
updated 6 months ago by
James W. MacDonald
65k • written 6 months ago by
Aytaç
• 0
0
votes
2
replies
779
views
MACS2 not installing
Bioconductor
6 months ago
alia.sinqua
• 0
0
votes
0
replies
572
views
NAs in tabular output from DNAcopy
Bioconductor
DNAcopy
6 months ago
NewtoBioconductor
• 0
1
vote
4
replies
660
views
running Bioconductor Docker images only works with versions <= 3.15
Bioconductor
7 months ago
patrick.turko
• 0
0
votes
1
reply
338
views
Package "Netboost" is an Unix-only package, how can I install it in R?
Bioconductor
netboost
updated 7 months ago by
ATpoint
★ 3.9k • written 7 months ago by
laura1_z
• 0
1
vote
2
replies
585
views
unable to retrieve certain packages from bioconductor 3.15
Bioconductor
biocondu
updated 7 months ago by
James W. MacDonald
65k • written 7 months ago by
Ashton
▴ 10
1
vote
13
replies
10k
views
unable to access index for repository
Bioconductor
ConsensusClusterPlus
updated 7 months ago by
Mehdi
• 0 • written 15 months ago by
k.wickstrom
• 0
0
votes
0
replies
374
views
News:
Bioconductor.org website new design - We Need Your Input!
Bioconductor
Community
Website
7 months ago
Maria Doyle
▴ 70
0
votes
21
replies
2.3k
views
problem installing ENmix package
ENmix
Bioconductor
rtracklayer
written 3.0 years ago by
lea
• 0
0
votes
2
replies
2.1k
views
vmatchPattern on DNAstring set
Bioconductor
7 months ago
Avner
• 0
0
votes
1
reply
390
views
Read methylation data from tar files on GEO (GSE73303)
GeneExpression
Bioconductor
GEOquery
MethylationArrayData
8 months ago
Arianna
• 0
0
votes
1
reply
533
views
bioconductor - rhdf5 is not avbauloable for bioconductor version "3.14"
Bioconductor
Install
updated 8 months ago by
Mike Smith
★ 6.4k • written 8 months ago by
Catia
• 0
3
votes
5
replies
981
views
why is downloading the .tar.gz file for a given bioconductor package, then installing with R CMD INSTALL so much more effective than BiocManager::ins…
Bioconductor
Install
library
biocmanager
updated 8 months ago by
Vincent J. Carey, Jr.
6.7k • written 8 months ago by
Ndimensional
▴ 20
0
votes
0
replies
397
views
News:
Reminder: BioC2023 in-person registration closes 19th July!
Bioconductor
BioC2023
Conference
8 months ago
Maria Doyle
▴ 70
50 results • Page
1 of 1
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Comment: BioC2024 abstract submission is open!
by
howell
• 0
What are the conditions for approval of people in difficult circumstances? I want this scholarship
Comment: European Bioconductor Conference 2023 planning
by
william
• 0
[@MariaDoyle][1] Without a doubt. In that position, I will be included in the discussion. [1]: https://support.bioconductor.org/u/239…
Comment: Problem converting msigdb Human symbols to Zebrafish in gmt format
by
Georg
• 0
Thank you for the detailed response. The code worked right away. I appreciate the quick response.
Comment: Error in ImportRData
by
ulna
• 0
[@alastair.fortune][1][gorilla tag][2] The most recent version of IsoformSwitchAnalyzeR available on Github (v. 2.01.13) allowed me to reso…
Comment: gds in GEOmetadb 2023-06-26 version is empty
by
ulna
• 0
[@ilayahari][1][basketball stars][2] The complete version of GEOmetadb cannot be downloaded, even though the demo file works. [1]: http…
Votes
Answer: Need help with creating and plotting temporal clustering analysis of DEGs
Answer: Problem converting msigdb Human symbols to Zebrafish in gmt format
Answer: Problem converting msigdb Human symbols to Zebrafish in gmt format
Answer: Problem converting msigdb Human symbols to Zebrafish in gmt format
A: HLA genes missing from TxDb.Hsapiens.UCSC.hg38.knownGene
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