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rbronste
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@rbronste-12189
Last seen 5.0 years ago
I have an AME motif calling output as follows (in a .tsv file) and can import this into R using read.table, however I would like to take the motif_ID, seq_ID, and class fields and split it off into a GRanges object or DataFrame, how can I go about doing this? Thanks!
motif_DB |
motif_ID |
seq_ID |
FASTA_score |
PWM_score |
class |
JASPAR2018_CORE_vertebrates |
MA0004.1 |
chr8:3235975-3236325 |
146 |
11.6737 |
tp |
|
|
So after read.table, if I do as you suggest I get the following error:
Which is odd since my seq_ID column does match the format it specifies.