Hi all, The annotation data package for Affy chip hgu133a reveals a number (23 to be exact) of environments, all with names like hgu133aXXXXXXX. While XXXXXX usually makes sense (ACCNUM == accession number, etc), is there a key somewhere that describes in more detail what the environments refer to? Couldn't find it in the vignettes. Thanks much, dave -- David O. Nelson <daven@llnl.gov> LLNL

After loading the package, ?hgu133aXXXXXXX will display a help page for that environment. >From: "David O. Nelson" <daven@llnl.gov> >Mime-Version: 1.0 >Date: 03 Apr 2003 11:02:58 -0800 >Content-Transfer-Encoding: 7bit >X-Virus-Scanned: by amavisd-milter (http://amavis.org/) >X-Virus-Scanned: by amavisd-milter (http://amavis.org/) >X-Spam-Status: No, hits=0.0 required=5.0 tests=NOSPAM_INC,SIGNATURE_SHORT_DENSE,SPAM_PHRASE_00_01, TO_LOCALPART_EQ_REAL version=2.43 >X-Spam-Level: >Subject: [BioC] Environments in affy data packages? >X-BeenThere: bioconductor@stat.math.ethz.ch >X-Mailman-Version: 2.1.1 >List-Id: The Bioconductor Project Mailing List <bioconductor.stat.math.ethz.ch> >List-Help: <mailto:bioconductor- request@stat.math.ethz.ch?subject="help"> >List-Post: <mailto:bioconductor@stat.math.ethz.ch> >List-Subscribe: <https: www.stat.math.ethz.ch="" mailman="" listinfo="" bioconductor="">, <mailto:bioconductor-request@stat.math.ethz.ch?subject=subscribe> >List-Archive: <https: www.stat.math.ethz.ch="" pipermail="" bioconductor=""> >List-Unsubscribe: <https: www.stat.math.ethz.ch="" mailman="" listinfo="" bioconductor="">, <mailto:bioconductor-request@stat.math.ethz.ch?subject=unsubscribe> > >Hi all, > >The annotation data package for Affy chip hgu133a reveals a number (23 >to be exact) of environments, all with names like hgu133aXXXXXXX. > >While XXXXXX usually makes sense (ACCNUM == accession number, etc), is >there a key somewhere that describes in more detail what the >environments refer to? > >Couldn't find it in the vignettes. > >Thanks much, > >dave > >-- >David O. Nelson <daven@llnl.gov> >LLNL > >_______________________________________________ >Bioconductor mailing list >Bioconductor@stat.math.ethz.ch >https://www.stat.math.ethz.ch/mailman/listinfo/bioconductor Jianhua Zhang Department of Biostatistics Dana-Farber Cancer Institute 44 Binney Street Boston, MA 02115-6084