Interpretation of PVCA result and what to correct for
0
0
Entering edit mode
@sebastian-hesse-18351
Last seen 2.8 years ago
Germany / Munich / Dr.von Hauner Childr…

Thanks to PVCA I finally found a tool to check the effect of all my suspected confounders I annotated in my proteome project.

But now my problem is that I don't really know what to correct for and what to better leave.

https://ibb.co/bUCX4f

 

First, should I now remove all major effects (eg data.processed, amountOfCells, Gender, Age) ?
Do I need to take special care of the covariates (eg: sample-origin:age.in.years?

Which package would you recommend to use for correction?

Thanks a lot!
Sebastian

 

pvca batch effect batch effect correction • 887 views
ADD COMMENT

Login before adding your answer.

Traffic: 519 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6