biotmle package error with heatmap/dendrogram
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@detroitdrive-16757
Last seen 4.7 years ago

Hello, I'm following the biomarker pipeline found in the biotmle package and ran across an error with the heatmap/dendrogram command (see below).

heatmap_ic(x = limmaTMLEout,
+            row.dendrogram = TRUE,
+            clustering.method = "hierarchical",
+            design = design, FDRcutoff = 1.0, top = 10)

**Error in superheat::superheat(as.matrix(biomarkerTMLEout_top), row.dendrogram = TRUE,  : 
  formal argument "row.dendrogram" matched by multiple actual arguments**


I installed the superheat package so I'm not sure where the error is coming from?  

biotmle • 695 views
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I haven't seen that error so far but I hope it gets resolved. www.hvacproscolumbia.com

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nhejazi • 0
@nhejazi-10825
Last seen 4.5 years ago
UC Berkeley

Please see the answer at https://github.com/nhejazi/biotmle/issues/61. Note that this will be resolved upon the next release of Bioconductor v3.9.

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