Question: biotmle package error with heatmap/dendrogram
0
gravatar for detroit.drive
5 weeks ago by
detroit.drive0 wrote:

Hello, I'm following the biomarker pipeline found in the biotmle package and ran across an error with the heatmap/dendrogram command (see below).

heatmap_ic(x = limmaTMLEout,
+            row.dendrogram = TRUE,
+            clustering.method = "hierarchical",
+            design = design, FDRcutoff = 1.0, top = 10)

**Error in superheat::superheat(as.matrix(biomarkerTMLEout_top), row.dendrogram = TRUE,  : 
  formal argument "row.dendrogram" matched by multiple actual arguments**


I installed the superheat package so I'm not sure where the error is coming from?  

biotmle • 69 views
ADD COMMENTlink modified 4 weeks ago by nhejazi0 • written 5 weeks ago by detroit.drive0

I haven't seen that error so far but I hope it gets resolved. www.hvacproscolumbia.com

ADD REPLYlink written 25 days ago by columbiahaulingservice0
Answer: biotmle package error with heatmap/dendrogram
0
gravatar for nhejazi
4 weeks ago by
nhejazi0
UC Berkeley
nhejazi0 wrote:

Please see the answer at https://github.com/nhejazi/biotmle/issues/61. Note that this will be resolved upon the next release of Bioconductor v3.9.

ADD COMMENTlink written 4 weeks ago by nhejazi0
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