Just taking my first look at DeepBlueR, read the man pages and the vignette, ran through some of the examples. Good stuff here - but I am a little confused about formulating my typical queries.
For example, in naive pseudo-code, to obtain all the ChIP-seq hits in a small region of the hg38 genome:
tbl.hits <- query(deepblue, project="ChIP-atlas", genome="hg38", region="chr2:233,054,878-233,112,822")
With this style of query - with no mention of experiment type, cell type, or antibody - I could obtain all the reported binding sites in the region, with any filtering (by cell type, score, or TF) as a subsequent step.
Could you point me in the right direction?