Question: rtracklayer BigBed format
0
gravatar for foehn
9 weeks ago by
foehn30
foehn30 wrote:

Hello,

In this tutorial (https://kasperdanielhansen.github.io/genbioconductor/html/rtracklayer_Import.html), it appears that rtracklayer should be able to handle BigBed ("...includes functionality for parsing file formats associated the UCSC Genome Browser such as BED, Wig, BigBed and BigWig").

However, as of the latest update v1.42.1, rtracklayer lacks of support for BigBed. I wonder if this is true, and if there is any plan to implement this format in the near future?

Thanks,

rtracklayer ngs bigbed • 87 views
ADD COMMENTlink modified 9 weeks ago by Michael Lawrence10k • written 9 weeks ago by foehn30
Answer: rtracklayer BigBed format
2
gravatar for Michael Lawrence
9 weeks ago by
United States
Michael Lawrence10k wrote:

No, there is no support for BigBed, nor is any planned. But we'd be open to contributions.

ADD COMMENTlink written 9 weeks ago by Michael Lawrence10k
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