Question: Deseq2 two controls in design experiment
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gravatar for tanyabioinfo
10 weeks ago by
tanyabioinfo20
tanyabioinfo20 wrote:

Hi

I am using Deseq2 for Differential gene expression analysis. I have two controls ( but they are not technical replicates) and one patient.

I designed the experiment with two controls together. I was wondering what Deseq2 does when two controls are taken together. Does it takes an average of the two controls.

Many Thanks

Tanya Singh

rnaseq deseq2 • 76 views
ADD COMMENTlink modified 10 weeks ago by Michael Love23k • written 10 weeks ago by tanyabioinfo20
Answer: Deseq2 two controls in design experiment
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gravatar for Michael Love
10 weeks ago by
Michael Love23k
United States
Michael Love23k wrote:

I’m not sure I understand exactly but if you have control 1 and control 2 vs case, yes the LFC will be roughly case over the average of the controls.

ADD COMMENTlink written 10 weeks ago by Michael Love23k
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