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joy@wh
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@joywh-20076
Last seen 5.2 years ago
Hi all, I got a problem running DESeq2. I was running scripts from http://www.bioconductor.org/packages/devel/bioc/vignettes/DESeq2/inst/doc/DESeq2.html#differential-expression-analysis (by Michael I. Love, Simon Anders, and Wolfgang Huber). It looks fine until the step
dds <- DESeq(dds) estimating size factors Error in .Call(.NAME, ..., PACKAGE = PACKAGE) : Incorrect number of arguments (6), expecting 4 for 'select_hits'.
A while ago, I ran another DESeq2 script and got the same error at the same step. While I know the these scripts are fine, I wonder what might have caused the error? I am using the latest version of R studio (Version 1.1.463).
Thanks in advance for any comments or suggestions.
Hi, Michael, Thank you very much for the suggestion. I first only updated the DESeq2 and it didn't work, then I reinstalled all my packages and this time it WORKS! Big thanks again for your reply:)
Best！