Question: DESeq2: Errors in .Call(.NAME, ..., PACKAGE = PACKAGE)
0
gravatar for joy@wh
8 months ago by
joy@wh0
joy@wh0 wrote:

Hi all, I got a problem running DESeq2. I was running scripts from http://www.bioconductor.org/packages/devel/bioc/vignettes/DESeq2/inst/doc/DESeq2.html#differential-expression-analysis (by Michael I. Love, Simon Anders, and Wolfgang Huber). It looks fine until the step

dds <- DESeq(dds) estimating size factors Error in .Call(.NAME, ..., PACKAGE = PACKAGE) : Incorrect number of arguments (6), expecting 4 for 'select_hits'.

A while ago, I ran another DESeq2 script and got the same error at the same step. While I know the these scripts are fine, I wonder what might have caused the error? I am using the latest version of R studio (Version 1.1.463).

Thanks in advance for any comments or suggestions.

deseq2 errors • 119 views
ADD COMMENTlink modified 8 months ago by Michael Love26k • written 8 months ago by joy@wh0
Answer: DESeq2: Errors in .Call(.NAME, ..., PACKAGE = PACKAGE)
1
gravatar for Michael Love
8 months ago by
Michael Love26k
United States
Michael Love26k wrote:

Can you try reinstalling DESeq2 on your system?

Generally, you can start by installing the latest version of R and then Bioconductor.

http://bioconductor.org/install

ADD COMMENTlink written 8 months ago by Michael Love26k

Hi, Michael, Thank you very much for the suggestion. I first only updated the DESeq2 and it didn't work, then I reinstalled all my packages and this time it WORKS! Big thanks again for your reply:)

Best!

ADD REPLYlink written 8 months ago by joy@wh0
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